no need to continue this thread too much.
its on me and i will solve it.
keren.
On May 18, 2011, at 11:01 AM, Ben Webb wrote:
> On 05/18/2011 10:39 AM, Daniel Russel wrote:
>> On May 18, 2011, at 9:05 AM, Friedrich Foerster wrote:
>>> I remember painfully writing a test case for the em restraint and
>>> the derivatives when I implemented the em score. Is that test not
>>> functional anymore?
>> They are still there, but I'm not sure if they pass. It also isn't
>> clear to me what exactly they test as they use some modeller
>> functionality that I am not familiar with to do the actual checking.
>
> They use Modeller functionality that essentially does the same thing as
> IMP.test.TestCase.assertXYZDerivativesInTolerance() - i.e. it calculates
> the xyz derivatives numerically (basically by moving each atom a small
> amount along each axis and recalculating the score) and compares with
> the analytical values. In principle we could rework this test to no
> longer require Modeller. But I'd prefer to wait until it actually works
> before we do that. ;)
>
>> and for some reason the windows test run didn't terminate
>
> The tests didn't complete because the IMP.rmf tests took several hours
> to run, leaving no time for the rest of the tests. Unit tests shouldn't
> take hours to run...
>
> (The reason this only just started happening is that we didn't build
> IMP.rmf on Windows until yesterday, when I built the necessary HDF5 and
> Boost DLL dependencies.)
>
>> And the em tests have been failing in general
>> for rather a while, and it is not something I've looked in to.
>
> Just like Keren said, she broke the derivatives. That happened around
> October last year. Every now and again I mention it to Keren again and
> she says "yes, I will look at it". ;)
>
> Ben
> --
> ben@salilab.orghttp://salilab.org/~ben/
> "It is a capital mistake to theorize before one has data."
> - Sir Arthur Conan Doyle
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