- An interactive mode has been added to IMP::domino::DominoSampler. The interactive mode is useful for understanding domino sampling runs and distributing domino comptutations across a cluster.
- Functions IMP::domino::set_assignments() and IMP::domino::get_assignments() were added which support
writing subset assignments to data fields in hdf5 files. These can be used to helping to distribute
domino on a cluster as well as debugging the sampling process.
- a python function IMP.show_graphviz() has been added that attempts to render a graph with \c dot and then open the pdf.
- The python functions IMP.show_altgraph() and IMP.get_networkx_graph() have been added to provide alternatives for quick viewing of \imp graphs. Unfortunately, they still pale compared to graphviz.
- IMP.atom.create_cover() was added to facilitate creating a summary particle for part of a hierarchy in order to accelerate restraints.
- IMP.hdf5 was renamed to IMP.rmf, the proposed name of the file format that it supports. That also better separates the hdf5 support from the file format support.
- The old I/O functions have been marked as deprecated in favor of IMP.hdf5. You may need to compile with deprecated="yes" if you use them.
- The python graph interface now has a remove_vertex method.