[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [IMP-dev] reading multiple chains

I can't reproduce it. I read the attached file and get the attached result for the resulting PDB which has all the residue indexes right. Can you provide an example pdb? 
Attachment:
results

Description: Binary data


Attachment:
symm2.pdb

Description: Binary data


import IMP.atom
m= IMP.Model()
p= IMP.atom.read_pdb("../symm2.pdb", m)
IMP.atom.show_molecular_hierarchy(p)


On Oct 21, 2009, at 1:59 AM, Keren Lasker wrote:


hey -


so reading a pdb file with multiple chains, IMP changes the residues  
indexes to have sequential residue indexes.

so imagine 3 chains A from 1 to 10, B from 1 to 10 and C from 1 to 10
reading into IMP we get:
A from 1 to 10
B from 11 to 20
C from 21 to 30

this really messes up stuff ....

is there a special reason for that ?

thanks,
Keren.


_______________________________________________
IMP-dev mailing list
IMP-dev@salilab.org
https://salilab.org/mailman/listinfo/imp-dev