Re: [IMP-dev] Decorator array cleanup

[Daniel Russel <>]

Sorry, I forgot the patch on that.

Attachment: chain2
Description: Binary data

On Jun 11, 2008, at 1:57 PM, Ben Webb wrote:

> Daniel Russel wrote:
> > This patch cleans up the code for the attribute arrays in  
> > decorators. In
> > terms of API changes it adds a method to get the ith residue from a
> > protein or chain or nucleotide. It also now enforces the create/cast
> > distinction with bonds, bonded and hierarchy nodes (previously any  
> > node
> > was a hierarchy node without having create cast on it).
>
> Committed as r591, but this breaks the example chain.py. Can you fix
> that, please?
>
> cd /Users/ben/imp/kernel/doc/examples && /Users/ben/imp/bin/imppy.sh
> python chain.py > /dev/null
> Traceback (most recent call last):
>   File "chain.py", line 29, in <module>
>     bpr= IMP.BondedDecorator.cast(chain[i-1])
> ValueError: Particle missing required attribues in cast
> examples FAILED
>
> 	Ben
> --
>                       http://salilab.org/~ben/
> "It is a capital mistake to theorize before one has data."
> 	- Sir Arthur Conan Doyle
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