11 from sys
import version_info
12 if version_info >= (2,6,0):
13 def swig_import_helper():
14 from os.path
import dirname
18 fp, pathname, description = imp.find_module(
'_IMP_symmetry', [dirname(__file__)])
24 _mod = imp.load_module(
'_IMP_symmetry', fp, pathname, description)
28 _IMP_symmetry = swig_import_helper()
29 del swig_import_helper
34 _swig_property = property
37 def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
38 if (name ==
"thisown"):
return self.this.own(value)
40 if type(value).__name__ ==
'SwigPyObject':
41 self.__dict__[name] = value
43 method = class_type.__swig_setmethods__.get(name,
None)
44 if method:
return method(self,value)
46 self.__dict__[name] = value
48 raise AttributeError(
"You cannot add attributes to %s" % self)
50 def _swig_setattr(self,class_type,name,value):
51 return _swig_setattr_nondynamic(self,class_type,name,value,0)
53 def _swig_getattr(self,class_type,name):
54 if (name ==
"thisown"):
return self.this.own()
55 method = class_type.__swig_getmethods__.get(name,
None)
56 if method:
return method(self)
57 raise AttributeError(name)
60 try: strthis =
"proxy of " + self.this.__repr__()
62 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
67 except AttributeError:
72 def _swig_setattr_nondynamic_method(set):
73 def set_attr(self,name,value):
74 if (name ==
"thisown"):
return self.this.own(value)
75 if hasattr(self,name)
or (name ==
"this"):
78 raise AttributeError(
"You cannot add attributes to %s" % self)
84 weakref_proxy = weakref.proxy
86 weakref_proxy =
lambda x: x
89 class IMP_SYMMETRY_SwigPyIterator(object):
90 """Proxy of C++ swig::IMP_SYMMETRY_SwigPyIterator class"""
91 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
92 def __init__(self, *args, **kwargs):
raise AttributeError(
"No constructor defined - class is abstract")
94 __swig_destroy__ = _IMP_symmetry.delete_IMP_SYMMETRY_SwigPyIterator
95 __del__ =
lambda self :
None;
97 """value(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
98 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_value(self)
102 incr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator
103 incr(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator
105 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_incr(self, n)
109 decr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator
110 decr(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator
112 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_decr(self, n)
114 def distance(self, *args):
115 """distance(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t"""
116 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_distance(self, *args)
118 def equal(self, *args):
119 """equal(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
120 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_equal(self, *args)
123 """copy(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator"""
124 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_copy(self)
127 """next(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
128 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_next(self)
131 """__next__(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
132 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___next__(self)
135 """previous(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
136 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_previous(self)
138 def advance(self, *args):
139 """advance(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
140 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_advance(self, *args)
142 def __eq__(self, *args):
143 """__eq__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
144 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___eq__(self, *args)
146 def __ne__(self, *args):
147 """__ne__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
148 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___ne__(self, *args)
150 def __iadd__(self, *args):
151 """__iadd__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
152 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___iadd__(self, *args)
154 def __isub__(self, *args):
155 """__isub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
156 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___isub__(self, *args)
158 def __add__(self, *args):
159 """__add__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
160 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___add__(self, *args)
162 def __sub__(self, *args):
164 __sub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator
165 __sub__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t
167 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___sub__(self, *args)
169 def __iter__(self):
return self
170 IMP_SYMMETRY_SwigPyIterator_swigregister = _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_swigregister
171 IMP_SYMMETRY_SwigPyIterator_swigregister(IMP_SYMMETRY_SwigPyIterator)
178 IMP_DEBUG = _IMP_symmetry.IMP_DEBUG
179 IMP_RELEASE = _IMP_symmetry.IMP_RELEASE
180 IMP_SILENT = _IMP_symmetry.IMP_SILENT
181 IMP_PROGRESS = _IMP_symmetry.IMP_PROGRESS
182 IMP_TERSE = _IMP_symmetry.IMP_TERSE
183 IMP_VERBOSE = _IMP_symmetry.IMP_VERBOSE
184 IMP_MEMORY = _IMP_symmetry.IMP_MEMORY
185 IMP_NONE = _IMP_symmetry.IMP_NONE
186 IMP_USAGE = _IMP_symmetry.IMP_USAGE
187 IMP_INTERNAL = _IMP_symmetry.IMP_INTERNAL
188 IMP_BASE_HAS_LOG4CXX = _IMP_symmetry.IMP_BASE_HAS_LOG4CXX
189 IMP_COMPILER_HAS_AUTO = _IMP_symmetry.IMP_COMPILER_HAS_AUTO
190 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_symmetry.IMP_COMPILER_HAS_DEBUG_VECTOR
191 IMP_BASE_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_BASE_HAS_BOOST_RANDOM
192 IMP_BASE_HAS_GPERFTOOLS = _IMP_symmetry.IMP_BASE_HAS_GPERFTOOLS
193 IMP_BASE_HAS_TCMALLOC_HEAPCHECKER = _IMP_symmetry.IMP_BASE_HAS_TCMALLOC_HEAPCHECKER
194 IMP_BASE_HAS_TCMALLOC_HEAPPROFILER = _IMP_symmetry.IMP_BASE_HAS_TCMALLOC_HEAPPROFILER
195 IMPBASE_SHOW_WARNINGS = _IMP_symmetry.IMPBASE_SHOW_WARNINGS
197 class _DirectorObjects(object):
198 """@internal Simple class to keep references to director objects
199 to prevent premature deletion."""
202 def register(self, obj):
203 """Take a reference to a director object; will only work for
204 refcounted C++ classes"""
205 if hasattr(obj,
'get_ref_count'):
206 self._objects.append(obj)
208 """Only drop our reference and allow cleanup by Python if no other
209 Python references exist (we hold 3 references: one in self._objects,
210 one in x, and one in the argument list for getrefcount) *and* no
211 other C++ references exist (the Python object always holds one)"""
212 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
213 or x.get_ref_count() > 1]
217 def get_object_count(self):
218 """Get number of director objects (useful for testing only)"""
219 return len(self._objects)
220 _director_objects = _DirectorObjects()
222 class _ostream(object):
223 """Proxy of C++ std::ostream class"""
224 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
225 def __init__(self, *args, **kwargs):
raise AttributeError(
"No constructor defined")
226 __repr__ = _swig_repr
227 def write(self, *args):
228 """write(_ostream self, char const * osa_buf)"""
229 return _IMP_symmetry._ostream_write(self, *args)
231 _ostream_swigregister = _IMP_symmetry._ostream_swigregister
232 _ostream_swigregister(_ostream)
234 IMP_COMPILER_HAS_OVERRIDE = _IMP_symmetry.IMP_COMPILER_HAS_OVERRIDE
235 IMP_COMPILER_HAS_FINAL = _IMP_symmetry.IMP_COMPILER_HAS_FINAL
236 IMP_HAS_NOEXCEPT = _IMP_symmetry.IMP_HAS_NOEXCEPT
238 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_FILESYSTEM
239 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
240 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_RANDOM
241 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_SYSTEM
242 IMPCGAL_SHOW_WARNINGS = _IMP_symmetry.IMPCGAL_SHOW_WARNINGS
244 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_IMP_CGAL
245 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
246 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
247 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_RANDOM
248 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_SYSTEM
249 IMP_ALGEBRA_HAS_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_CGAL
250 IMP_ALGEBRA_HAS_ANN = _IMP_symmetry.IMP_ALGEBRA_HAS_ANN
251 IMPALGEBRA_SHOW_WARNINGS = _IMP_symmetry.IMPALGEBRA_SHOW_WARNINGS
253 IMP_KERNEL_HAS_IMP_CGAL = _IMP_symmetry.IMP_KERNEL_HAS_IMP_CGAL
254 IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS
255 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_RANDOM
256 IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_SYSTEM
257 IMP_KERNEL_HAS_CGAL = _IMP_symmetry.IMP_KERNEL_HAS_CGAL
258 IMPKERNEL_SHOW_WARNINGS = _IMP_symmetry.IMPKERNEL_SHOW_WARNINGS
260 IMP_DISPLAY_HAS_IMP_BASE = _IMP_symmetry.IMP_DISPLAY_HAS_IMP_BASE
261 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_IMP_CGAL
262 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
263 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
264 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_RANDOM
265 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_SYSTEM
266 IMP_DISPLAY_HAS_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_CGAL
267 IMPDISPLAY_SHOW_WARNINGS = _IMP_symmetry.IMPDISPLAY_SHOW_WARNINGS
269 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
270 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
271 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
272 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
273 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
274 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_CGAL
275 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_HDF5
276 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_symmetry.IMPSCOREFUNCTOR_SHOW_WARNINGS
278 IMP_CORE_HAS_IMP_BASE = _IMP_symmetry.IMP_CORE_HAS_IMP_BASE
279 IMP_CORE_HAS_IMP_CGAL = _IMP_symmetry.IMP_CORE_HAS_IMP_CGAL
280 IMP_CORE_HAS_IMP_KERNEL = _IMP_symmetry.IMP_CORE_HAS_IMP_KERNEL
281 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CORE_HAS_BOOST_FILESYSTEM
282 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
283 IMP_CORE_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CORE_HAS_BOOST_RANDOM
284 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_CORE_HAS_BOOST_SYSTEM
285 IMP_CORE_HAS_CGAL = _IMP_symmetry.IMP_CORE_HAS_CGAL
286 IMP_CORE_HAS_HDF5 = _IMP_symmetry.IMP_CORE_HAS_HDF5
287 IMPCORE_SHOW_WARNINGS = _IMP_symmetry.IMPCORE_SHOW_WARNINGS
289 IMP_SYMMETRY_HAS_IMP_BASE = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_BASE
290 IMP_SYMMETRY_HAS_IMP_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_CGAL
291 IMP_SYMMETRY_HAS_IMP_DISPLAY = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_DISPLAY
292 IMP_SYMMETRY_HAS_IMP_KERNEL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_KERNEL
293 IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR
294 IMP_SYMMETRY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_FILESYSTEM
295 IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS
296 IMP_SYMMETRY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_RANDOM
297 IMP_SYMMETRY_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_SYSTEM
298 IMP_SYMMETRY_HAS_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_CGAL
299 IMP_SYMMETRY_HAS_HDF5 = _IMP_symmetry.IMP_SYMMETRY_HAS_HDF5
300 IMPSYMMETRY_SHOW_WARNINGS = _IMP_symmetry.IMPSYMMETRY_SHOW_WARNINGS
301 _object_types.append(
"BallMover")
303 _object_types.append(
"RigidBodyMover")
306 """Proxy of C++ IMP::symmetry::BallMover class"""
307 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
308 def __init__(self, *args):
310 __init__(IMP::symmetry::BallMover self, Particle p, IMP::kernel::Particles ps, IMP::Float max_tr, IMP::algebra::Vector3Ds ctrs,
311 IMP::algebra::Transformation3Ds trs) -> BallMover
313 this = _IMP_symmetry.new_BallMover(*args)
314 try: self.this.append(this)
315 except: self.this = this
316 def get_version_info(self):
317 """get_version_info(BallMover self) -> VersionInfo"""
318 return _IMP_symmetry.BallMover_get_version_info(self)
321 """__str__(BallMover self) -> std::string"""
322 return _IMP_symmetry.BallMover___str__(self)
325 """__repr__(BallMover self) -> std::string"""
326 return _IMP_symmetry.BallMover___repr__(self)
329 return _object_cast_to_BallMover(o)
330 get_from = staticmethod(get_from)
332 BallMover_swigregister = _IMP_symmetry.BallMover_swigregister
333 BallMover_swigregister(BallMover)
336 """Proxy of C++ IMP::symmetry::RigidBodyMover class"""
337 thisown = _swig_property(
lambda x: x.this.own(),
lambda x, v: x.this.own(v), doc=
'The membership flag')
338 def __init__(self, *args):
340 __init__(IMP::symmetry::RigidBodyMover self, RigidBody d, IMP::kernel::Particles ps, IMP::Float max_tr, IMP::Float max_ang, IMP::algebra::Vector3Ds ctrs,
341 IMP::algebra::Transformation3Ds trs) -> RigidBodyMover
343 this = _IMP_symmetry.new_RigidBodyMover(*args)
344 try: self.this.append(this)
345 except: self.this = this
346 def get_version_info(self):
347 """get_version_info(RigidBodyMover self) -> VersionInfo"""
348 return _IMP_symmetry.RigidBodyMover_get_version_info(self)
351 """__str__(RigidBodyMover self) -> std::string"""
352 return _IMP_symmetry.RigidBodyMover___str__(self)
355 """__repr__(RigidBodyMover self) -> std::string"""
356 return _IMP_symmetry.RigidBodyMover___repr__(self)
359 return _object_cast_to_RigidBodyMover(o)
360 get_from = staticmethod(get_from)
362 RigidBodyMover_swigregister = _IMP_symmetry.RigidBodyMover_swigregister
363 RigidBodyMover_swigregister(RigidBodyMover)
366 def get_module_version():
367 """get_module_version() -> std::string const"""
368 return _IMP_symmetry.get_module_version()
371 """get_example_path(std::string fname) -> std::string"""
372 return _IMP_symmetry.get_example_path(*args)
375 """get_data_path(std::string fname) -> std::string"""
376 return _IMP_symmetry.get_data_path(*args)
377 from .
import _version_check
378 _version_check.check_version(get_module_version())
Make CGAL functionality available to IMP.
std::string get_data_path(std::string file_name)
Return the full path to installed data.
Low level functionality (logging, error handling, profiling, command line flags etc) that is used by ...
std::string get_example_path(std::string file_name)
Return the path to installed example data for this module.
Composable functors to implement scores via compile-time composition.
A base class for classes which perturb particles.
Base functionality and abstract base classes for representation, scoring and sampling.
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
Output IMP model data in various file formats.