project.h File Reference

Generation of projections from models or density maps Copyright 2007-2015 IMP Inventors. All rights reserved. More...

#include "IMP/em2d/em2d_config.h"
#include "IMP/em2d/opencv_interface.h"
#include "IMP/em2d/ProjectionMask.h"
#include "IMP/em2d/Image.h"
#include "IMP/em2d/RegistrationResult.h"
#include "IMP/em2d/FFToperations.h"
#include "IMP/em2d/ImageReaderWriter.h"
#include "IMP/algebra/Vector3D.h"
#include "IMP/algebra/Rotation3D.h"
#include "IMP/algebra/SphericalVector3D.h"
#include "IMP/core/XYZR.h"
#include "IMP/base/Pointer.h"
#include "IMP.h"
#include <complex>
#include <algorithm>
#include <fstream>

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Classes
class	IMP::em2d::ProjectingOptions
	Parameters given as options to the get_projections() functions. More...
class	IMP::em2d::ProjectingParameters
	Parameters needed for the core projection routine. More...

Namespaces
	IMP
	Synonym for IMP::kernel.
	IMP::em2d
	Restraints using electron microscopy 2D images (class averages).

Typedefs
typedef IMP::base::Vector < ProjectingOptions >	IMP::em2d::ProjectingOptionsList
typedef IMP::base::Vector < ProjectingParameters >	IMP::em2d::ProjectingParametersList

Functions
Images	IMP::em2d::create_evenly_distributed_projections (const kernel::ParticlesTemp &ps, unsigned int n, const ProjectingOptions &options)
void	IMP::em2d::do_project_particles (const kernel::ParticlesTemp &ps, cv::Mat &m2, const algebra::Rotation3D &R, const algebra::Vector3D &translation, const ProjectingOptions &options, MasksManagerPtr masks)
	Projects a set of particles. This is the core function that others call. More...
algebra::Vector2Ds	IMP::em2d::do_project_vectors (const algebra::Vector3Ds &ps, const algebra::Rotation3D &R, const algebra::Vector3D &translation)
	Project the points contained in Vector3Ds to gen vectors in 2D. More...
algebra::Vector2Ds	IMP::em2d::do_project_vectors (const algebra::Vector3Ds &ps, const algebra::Rotation3D &R, const algebra::Vector3D &translation, const algebra::Vector3D &center)
	Project the points contained in Vector3Ds. More...
unsigned int	IMP::em2d::get_enclosing_image_size (const kernel::ParticlesTemp &ps, double pixel_size, unsigned int slack)
	Get an automatic size for an image that contains the particles. More...
void	IMP::em2d::get_projection (em2d::Image *img, const kernel::ParticlesTemp &ps, const RegistrationResult &reg, const ProjectingOptions &options, MasksManagerPtr masks=MasksManagerPtr(), String name="")
	Generates a projection from particles. More...
em2d::Images	IMP::em2d::get_projections (const kernel::ParticlesTemp &ps, const algebra::SphericalVector3Ds &vs, int rows, int cols, const ProjectingOptions &options, Strings names=Strings())
	Generates projections from particles. More...
em2d::Images	IMP::em2d::get_projections (const kernel::ParticlesTemp &ps, const RegistrationResults &registration_values, int rows, int cols, const ProjectingOptions &options, Strings names=Strings())
	Generates projections from particles. More...

Detailed Description

Generation of projections from models or density maps Copyright 2007-2015 IMP Inventors. All rights reserved.

Definition in file project.h.