converters.h File Reference

Converters of density values. More...

#include <IMP/em/em_config.h>
#include <IMP/base_types.h>
#include <IMP/macros.h>
#include "DensityMap.h"
#include "SampledDensityMap.h"
#include "SurfaceShellDensityMap.h"
#include <IMP/kernel/Particle.h>
#include "IMP/core/XYZ.h"
#include "IMP/algebra/Vector3D.h"

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Namespaces
	IMP
	Synonym for IMP::kernel.
	IMP::em
	Basic utilities for handling cryo-electron microscopy 3D density maps.

Functions
Float	IMP::em::calculate_intersection_score (const SurfaceShellDensityMap *d1, const SurfaceShellDensityMap *d2)
kernel::Particles	IMP::em::density2particles (DensityMap *dmap, Float threshold, kernel::Model *m, int step=1)
	Converts a density grid to a set of paritlces. More...
algebra::Vector3Ds	IMP::em::density2vectors (DensityMap *dmap, Float threshold)
	Converts a density grid to a set of paritlces. More...
SampledDensityMap *	IMP::em::particles2binarized_density (const kernel::ParticlesTemp &ps, Float resolution, Float apix, int sig_cutoff=3, const FloatKey &weight_key=IMP::atom::Mass::get_mass_key())
SampledDensityMap *	IMP::em::particles2density (const kernel::ParticlesTemp &ps, Float resolution, Float apix, int sig_cutoff=3, const FloatKey &weight_key=IMP::atom::Mass::get_mass_key())
	Resample a set of particles into a density grid. More...
SurfaceShellDensityMap *	IMP::em::particles2surface (const kernel::ParticlesTemp &ps, Float apix, const FloatKey &weight_key=IMP::atom::Mass::get_mass_key())
	Resample a set of particles into a density grid. More...

Detailed Description

Converters of density values.

Copyright 2007-2015 IMP Inventors. All rights reserved.

Definition in file converters.h.