IMP  2.4.0
The Integrative Modeling Platform
connectivity.py
1 ## \example container/connectivity.py
2 # Shows how to use and visualize the IMP::misc::ConnectingPairContainer.
3 
4 from __future__ import print_function
5 import IMP.container
6 import IMP.display
7 
8 m = IMP.kernel.Model()
9 ds = IMP.core.create_xyzr_particles(m, 20, .1)
10 sc = IMP.container.ListSingletonContainer(ds)
11 cpc = IMP.container.ConnectingPairContainer(sc, .1)
12 m.evaluate(False)
13 pg = IMP.core.EdgePairsGeometry(cpc)
14 w = IMP.display.ChimeraWriter("pairs.py")
15 w.add_geometry(pg)
16 print(pg.get_name())
17 del w
IMP::display::ChimeraWriter
Write geometry to a Python file for Chimera to read.
Definition: ChimeraWriter.h:29
IMP::container
Various classes to hold sets of particles.
IMP::container::ListSingletonContainer
Store a kernel::ParticleIndexes.
Definition: ListSingletonContainer.h:33
IMP::container::ConnectingPairContainer
A container which keeps a set of pairs that connect a set of spheres.
Definition: ConnectingPairContainer.h:40
IMP::core::create_xyzr_particles
XYZRs create_xyzr_particles(kernel::Model *m, unsigned int num, Float radius, Float box_side=10)
Create a set of particles with random coordinates.
IMP::core::EdgePairsGeometry
Display a segment for each pair in a IMP::kernel::PairContainer.
Definition: XYZR.h:168
IMP::display
Output IMP model data in various file formats.
IMP::kernel::Model
Class for storing model, its restraints, constraints, and particles.
Definition: kernel/Model.h:73