A Bayesian inference-based sampler. More...

#include "particle_states.h"
#include "Subset.h"
#include <IMP/ScoringFunction.h>
#include <IMP/display/declare_Geometry.h>
#include <boost/graph/adjacency_list.hpp>

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Namespaces
	IMP
	Synonym for IMP::kernel.

	IMP::domino
	Divide-and-conquer inferential optimization in discrete space.

Typedefs
typedef boost::graph	IMP::domino::InteractionGraph

typedef InteractionGraph::EdgeNameMap	IMP::domino::InteractionGraphConstEdgeName

typedef InteractionGraph::VertexNameMap	IMP::domino::InteractionGraphConstVertexName

typedef InteractionGraph::edge_descriptor	IMP::domino::InteractionGraphEdge

typedef boost::graph_traits < InteractionGraph >	IMP::domino::InteractionGraphTraits

typedef InteractionGraph::vertex_descriptor	IMP::domino::InteractionGraphVertex

typedef boost::graph	IMP::domino::SubsetGraph

typedef SubsetGraph::EdgeNameMap	IMP::domino::SubsetGraphConstEdgeName

typedef SubsetGraph::VertexNameMap	IMP::domino::SubsetGraphConstVertexName

typedef SubsetGraph::edge_descriptor	IMP::domino::SubsetGraphEdge

typedef boost::graph_traits < SubsetGraph >	IMP::domino::SubsetGraphTraits

typedef SubsetGraph::vertex_descriptor	IMP::domino::SubsetGraphVertex

Functions
SubsetGraph	IMP::domino::get_junction_tree (const InteractionGraph &ig)

SubsetGraph	IMP::domino::get_restraint_graph (ScoringFunctionAdaptor rs, const ParticleStatesTable *pst)

Subsets	IMP::domino::get_subsets (const SubsetGraph &g)
	Gets all of the Subsets of a SubsetGraph. More...

typedef boost::graph	IMP::domino::MergeTree

typedef MergeTree::VertexNameMap	IMP::domino::MergeTreeConstVertexName

typedef MergeTree::EdgeNameMap	IMP::domino::MergeTreeConstEdgeName

typedef boost::graph_traits < MergeTree >	IMP::domino::MergeTreeTraits

typedef MergeTree::vertex_descriptor	IMP::domino::MergeTreeVertex

typedef MergeTree::edge_descriptor	IMP::domino::MergeTreeEdge

void	IMP::domino::show_as_graphviz (const SubsetGraph &name, base::TextOutput out)

SubsetGraphVertexIndex	IMP::domino::get_vertex_index (const SubsetGraph &g)

InteractionGraph	IMP::domino::get_interaction_graph (ScoringFunctionAdaptor rs, const ParticleStatesTable *pst)

InteractionGraph	IMP::domino::get_interaction_graph (ScoringFunctionAdaptor rs, const kernel::ParticlesTemp &pst)

display::Geometries	IMP::domino::get_interaction_graph_geometry (const InteractionGraph &ig)

display::Geometries	IMP::domino::get_subset_graph_geometry (const SubsetGraph &ig)

MergeTree	IMP::domino::get_merge_tree (ScoringFunctionAdaptor input, const ParticleStatesTable *pst)

MergeTree	IMP::domino::get_merge_tree (const SubsetGraph &junction_tree)

MergeTree	IMP::domino::get_balanced_merge_tree (const SubsetGraph &junction_tree)

bool	IMP::domino::get_is_merge_tree (const MergeTree &tree, Subset all, bool verbose=true)

Read and write merge trees
Merge trees can be written to and read from a text stream. As always, this requires a canonical particles list whose order is the same for the reading and writing.
void	IMP::domino::write_merge_tree (const MergeTree &tree, const kernel::ParticlesTemp &ps, std::ostream &out)

MergeTree	IMP::domino::read_merge_tree (std::istream &input, const kernel::ParticlesTemp &ps)

Detailed Description

A Bayesian inference-based sampler.

Definition in file subset_graphs.h.

Namespaces

Typedefs

Functions

Read and write merge trees

Detailed Description