scores2D.h File Reference

Scoring functions for 2D Copyright 2007-2014 IMP Inventors. All rights reserved. More...

#include "IMP/em2d/em2d_config.h"
#include "IMP/em2d/Image.h"
#include "IMP/em2d/opencv_interface.h"
#include "IMP/em2d/RegistrationResult.h"
#include "IMP/base/Object.h"
#include <IMP/base/warning_macros.h>
#include <functional>

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Classes
class	IMP::em2d::ChiSquaredScore
	Score based on Chi^2 = ((pixels_image - pixels_projection)/stddev_image)^2. More...
class	IMP::em2d::EM2DScore
class	IMP::em2d::HasHigherCCC< T >
	Comparison by value of the ccc. More...
class	IMP::em2d::HasLowerScore< T >
	Compare two classes that return a score. More...
class	IMP::em2d::LessPairBySecond< T >
	Comparison of pairs by checking the second element. More...
class	IMP::em2d::MeanAbsoluteDifference
	Score based on the mean of the absolute difference. More...
class	IMP::em2d::ScoreFunction
	Base class for all scoring functions related to em2d. More...

Namespaces
	IMP
	Synonym for IMP::kernel.
	IMP::em2d
	Restraints using electron microscopy 2D images (class averages).

Typedefs
typedef IMP::base::Vector < IMP::base::Pointer < ChiSquaredScore > >	IMP::em2d::ChiSquaredScores
typedef IMP::base::Vector < IMP::base::WeakPointer < ChiSquaredScore > >	IMP::em2d::ChiSquaredScoresTemp
typedef IMP::base::Vector < IMP::base::Pointer < EM2DScore > >	IMP::em2d::EM2DScores
typedef IMP::base::Vector < IMP::base::WeakPointer < EM2DScore > >	IMP::em2d::EM2DScoresTemp
typedef IMP::base::Vector < IMP::base::Pointer < MeanAbsoluteDifference > >	IMP::em2d::MeanAbsoluteDifferences
typedef IMP::base::Vector < IMP::base::WeakPointer < MeanAbsoluteDifference > >	IMP::em2d::MeanAbsoluteDifferencesTemp
typedef IMP::base::Vector < IMP::base::Pointer < ScoreFunction > >	IMP::em2d::ScoreFunctions
typedef IMP::base::Vector < IMP::base::WeakPointer < ScoreFunction > >	IMP::em2d::ScoreFunctionsTemp

Functions
double	IMP::em2d::get_average_rotation_error (const RegistrationResults &correct_RRs, const RegistrationResults &computed_RRs)
double	IMP::em2d::get_average_shift_error (const RegistrationResults &correct_RRs, const RegistrationResults &computed_RRs)
double	IMP::em2d::get_cross_correlation_coefficient (const cv::Mat &m1, const cv::Mat &m2)
	Computes the cross-correlation coefficient between to matrices. More...
double	IMP::em2d::get_global_score (const RegistrationResults &RRs)
double	IMP::em2d::get_rotation_error (const RegistrationResult &rr1, const RegistrationResult &rr2)
double	IMP::em2d::get_shift_error (const RegistrationResult &rr1, const RegistrationResult &rr2)
	Distance between the two in-plane translations. More...

Detailed Description

Scoring functions for 2D Copyright 2007-2014 IMP Inventors. All rights reserved.

Definition in file scores2D.h.