IMP  2.3.0
The Integrative Modeling Platform
rotamer/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 3.0.2
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 
9 
10 
11 from sys import version_info
12 if version_info >= (2,6,0):
13  def swig_import_helper():
14  from os.path import dirname
15  import imp
16  fp = None
17  try:
18  fp, pathname, description = imp.find_module('_IMP_rotamer', [dirname(__file__)])
19  except ImportError:
20  import _IMP_rotamer
21  return _IMP_rotamer
22  if fp is not None:
23  try:
24  _mod = imp.load_module('_IMP_rotamer', fp, pathname, description)
25  finally:
26  fp.close()
27  return _mod
28  _IMP_rotamer = swig_import_helper()
29  del swig_import_helper
30 else:
31  import _IMP_rotamer
32 del version_info
33 try:
34  _swig_property = property
35 except NameError:
36  pass # Python < 2.2 doesn't have 'property'.
37 def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
38  if (name == "thisown"): return self.this.own(value)
39  if (name == "this"):
40  if type(value).__name__ == 'SwigPyObject':
41  self.__dict__[name] = value
42  return
43  method = class_type.__swig_setmethods__.get(name,None)
44  if method: return method(self,value)
45  if (not static):
46  self.__dict__[name] = value
47  else:
48  raise AttributeError("You cannot add attributes to %s" % self)
49 
50 def _swig_setattr(self,class_type,name,value):
51  return _swig_setattr_nondynamic(self,class_type,name,value,0)
52 
53 def _swig_getattr(self,class_type,name):
54  if (name == "thisown"): return self.this.own()
55  method = class_type.__swig_getmethods__.get(name,None)
56  if method: return method(self)
57  raise AttributeError(name)
58 
59 def _swig_repr(self):
60  try: strthis = "proxy of " + self.this.__repr__()
61  except: strthis = ""
62  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
63 
64 try:
65  _object = object
66  _newclass = 1
67 except AttributeError:
68  class _object : pass
69  _newclass = 0
70 
71 
72 try:
73  import weakref
74  weakref_proxy = weakref.proxy
75 except:
76  weakref_proxy = lambda x: x
77 
78 
79 class IMP_ROTAMER_SwigPyIterator(_object):
80  """Proxy of C++ swig::IMP_ROTAMER_SwigPyIterator class"""
81  __swig_setmethods__ = {}
82  __setattr__ = lambda self, name, value: _swig_setattr(self, IMP_ROTAMER_SwigPyIterator, name, value)
83  __swig_getmethods__ = {}
84  __getattr__ = lambda self, name: _swig_getattr(self, IMP_ROTAMER_SwigPyIterator, name)
85  def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined - class is abstract")
86  __repr__ = _swig_repr
87  __swig_destroy__ = _IMP_rotamer.delete_IMP_ROTAMER_SwigPyIterator
88  __del__ = lambda self : None;
89  def value(self):
90  """value(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
91  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_value(self)
92 
93  def incr(self, n=1):
94  """
95  incr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
96  incr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
97  """
98  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_incr(self, n)
99 
100  def decr(self, n=1):
101  """
102  decr(IMP_ROTAMER_SwigPyIterator self, size_t n=1) -> IMP_ROTAMER_SwigPyIterator
103  decr(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator
104  """
105  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_decr(self, n)
106 
107  def distance(self, *args):
108  """distance(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t"""
109  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_distance(self, *args)
110 
111  def equal(self, *args):
112  """equal(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
113  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_equal(self, *args)
114 
115  def copy(self):
116  """copy(IMP_ROTAMER_SwigPyIterator self) -> IMP_ROTAMER_SwigPyIterator"""
117  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_copy(self)
118 
119  def next(self):
120  """next(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
121  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_next(self)
122 
123  def __next__(self):
124  """__next__(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
125  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___next__(self)
126 
127  def previous(self):
128  """previous(IMP_ROTAMER_SwigPyIterator self) -> PyObject *"""
129  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_previous(self)
130 
131  def advance(self, *args):
132  """advance(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
133  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_advance(self, *args)
134 
135  def __eq__(self, *args):
136  """__eq__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
137  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___eq__(self, *args)
138 
139  def __ne__(self, *args):
140  """__ne__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> bool"""
141  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___ne__(self, *args)
142 
143  def __iadd__(self, *args):
144  """__iadd__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
145  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___iadd__(self, *args)
146 
147  def __isub__(self, *args):
148  """__isub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
149  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___isub__(self, *args)
150 
151  def __add__(self, *args):
152  """__add__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator"""
153  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___add__(self, *args)
154 
155  def __sub__(self, *args):
156  """
157  __sub__(IMP_ROTAMER_SwigPyIterator self, ptrdiff_t n) -> IMP_ROTAMER_SwigPyIterator
158  __sub__(IMP_ROTAMER_SwigPyIterator self, IMP_ROTAMER_SwigPyIterator x) -> ptrdiff_t
159  """
160  return _IMP_rotamer.IMP_ROTAMER_SwigPyIterator___sub__(self, *args)
161 
162  def __iter__(self): return self
163 IMP_ROTAMER_SwigPyIterator_swigregister = _IMP_rotamer.IMP_ROTAMER_SwigPyIterator_swigregister
164 IMP_ROTAMER_SwigPyIterator_swigregister(IMP_ROTAMER_SwigPyIterator)
165 
166 _value_types=[]
167 _object_types=[]
168 _raii_types=[]
169 _plural_types=[]
170 
171 IMP_DEBUG = _IMP_rotamer.IMP_DEBUG
172 IMP_RELEASE = _IMP_rotamer.IMP_RELEASE
173 IMP_SILENT = _IMP_rotamer.IMP_SILENT
174 IMP_PROGRESS = _IMP_rotamer.IMP_PROGRESS
175 IMP_TERSE = _IMP_rotamer.IMP_TERSE
176 IMP_VERBOSE = _IMP_rotamer.IMP_VERBOSE
177 IMP_MEMORY = _IMP_rotamer.IMP_MEMORY
178 IMP_NONE = _IMP_rotamer.IMP_NONE
179 IMP_USAGE = _IMP_rotamer.IMP_USAGE
180 IMP_INTERNAL = _IMP_rotamer.IMP_INTERNAL
181 IMP_BASE_HAS_LOG4CXX = _IMP_rotamer.IMP_BASE_HAS_LOG4CXX
182 IMP_COMPILER_HAS_AUTO = _IMP_rotamer.IMP_COMPILER_HAS_AUTO
183 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_rotamer.IMP_COMPILER_HAS_DEBUG_VECTOR
184 IMP_BASE_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_BASE_HAS_BOOST_RANDOM
185 IMP_BASE_HAS_GPERFTOOLS = _IMP_rotamer.IMP_BASE_HAS_GPERFTOOLS
186 IMP_BASE_HAS_TCMALLOC_HEAPCHECKER = _IMP_rotamer.IMP_BASE_HAS_TCMALLOC_HEAPCHECKER
187 IMP_BASE_HAS_TCMALLOC_HEAPPROFILER = _IMP_rotamer.IMP_BASE_HAS_TCMALLOC_HEAPPROFILER
188 IMPBASE_SHOW_WARNINGS = _IMP_rotamer.IMPBASE_SHOW_WARNINGS
189 import sys
190 class _DirectorObjects(object):
191  """@internal Simple class to keep references to director objects
192  to prevent premature deletion."""
193  def __init__(self):
194  self._objects = []
195  def register(self, obj):
196  """Take a reference to a director object; will only work for
197  refcounted C++ classes"""
198  if hasattr(obj, 'get_ref_count'):
199  self._objects.append(obj)
200  def cleanup(self):
201  """Only drop our reference and allow cleanup by Python if no other
202  Python references exist (we hold 3 references: one in self._objects,
203  one in x, and one in the argument list for getrefcount) *and* no
204  other C++ references exist (the Python object always holds one)"""
205  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
206  or x.get_ref_count() > 1]
207 
208 
209  self._objects = objs
210  def get_object_count(self):
211  """Get number of director objects (useful for testing only)"""
212  return len(self._objects)
213 _director_objects = _DirectorObjects()
214 
215 DEFAULT_CHECK = _IMP_rotamer.DEFAULT_CHECK
216 NONE = _IMP_rotamer.NONE
217 USAGE = _IMP_rotamer.USAGE
218 USAGE_AND_INTERNAL = _IMP_rotamer.USAGE_AND_INTERNAL
219 
220 def set_check_level(*args):
221  """set_check_level(IMP::base::CheckLevel tf)"""
222  return _IMP_rotamer.set_check_level(*args)
223 
224 def get_check_level():
225  """get_check_level() -> IMP::base::CheckLevel"""
226  return _IMP_rotamer.get_check_level()
227 class _ostream(_object):
228  """Proxy of C++ std::ostream class"""
229  __swig_setmethods__ = {}
230  __setattr__ = lambda self, name, value: _swig_setattr(self, _ostream, name, value)
231  __swig_getmethods__ = {}
232  __getattr__ = lambda self, name: _swig_getattr(self, _ostream, name)
233  def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
234  __repr__ = _swig_repr
235  def write(self, *args):
236  """write(_ostream self, char const * osa_buf)"""
237  return _IMP_rotamer._ostream_write(self, *args)
238 
239 _ostream_swigregister = _IMP_rotamer._ostream_swigregister
240 _ostream_swigregister(_ostream)
241 
242 IMP_COMPILER_HAS_OVERRIDE = _IMP_rotamer.IMP_COMPILER_HAS_OVERRIDE
243 IMP_COMPILER_HAS_FINAL = _IMP_rotamer.IMP_COMPILER_HAS_FINAL
244 IMP_HAS_NOEXCEPT = _IMP_rotamer.IMP_HAS_NOEXCEPT
245 import IMP.base
246 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_FILESYSTEM
247 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
248 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_RANDOM
249 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CGAL_HAS_BOOST_SYSTEM
250 IMPCGAL_SHOW_WARNINGS = _IMP_rotamer.IMPCGAL_SHOW_WARNINGS
251 import IMP.cgal
252 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_IMP_CGAL
253 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
254 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
255 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_RANDOM
256 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ALGEBRA_HAS_BOOST_SYSTEM
257 IMP_ALGEBRA_HAS_CGAL = _IMP_rotamer.IMP_ALGEBRA_HAS_CGAL
258 IMP_ALGEBRA_HAS_ANN = _IMP_rotamer.IMP_ALGEBRA_HAS_ANN
259 IMPALGEBRA_SHOW_WARNINGS = _IMP_rotamer.IMPALGEBRA_SHOW_WARNINGS
260 import IMP.algebra
261 IMP_KERNEL_HAS_IMP_CGAL = _IMP_rotamer.IMP_KERNEL_HAS_IMP_CGAL
262 IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS
263 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_RANDOM
264 IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_KERNEL_HAS_BOOST_SYSTEM
265 IMP_KERNEL_HAS_CGAL = _IMP_rotamer.IMP_KERNEL_HAS_CGAL
266 IMPKERNEL_SHOW_WARNINGS = _IMP_rotamer.IMPKERNEL_SHOW_WARNINGS
267 import IMP.kernel
268 IMP_DISPLAY_HAS_IMP_BASE = _IMP_rotamer.IMP_DISPLAY_HAS_IMP_BASE
269 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_IMP_CGAL
270 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
271 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
272 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_RANDOM
273 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_DISPLAY_HAS_BOOST_SYSTEM
274 IMP_DISPLAY_HAS_CGAL = _IMP_rotamer.IMP_DISPLAY_HAS_CGAL
275 IMPDISPLAY_SHOW_WARNINGS = _IMP_rotamer.IMPDISPLAY_SHOW_WARNINGS
276 import IMP.display
277 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
278 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
279 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
280 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
281 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
282 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_CGAL
283 IMP_SCORE_FUNCTOR_HAS_HDF5 = _IMP_rotamer.IMP_SCORE_FUNCTOR_HAS_HDF5
284 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_rotamer.IMPSCOREFUNCTOR_SHOW_WARNINGS
285 import IMP.score_functor
286 IMP_CORE_HAS_IMP_BASE = _IMP_rotamer.IMP_CORE_HAS_IMP_BASE
287 IMP_CORE_HAS_IMP_CGAL = _IMP_rotamer.IMP_CORE_HAS_IMP_CGAL
288 IMP_CORE_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CORE_HAS_IMP_KERNEL
289 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_FILESYSTEM
290 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
291 IMP_CORE_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CORE_HAS_BOOST_RANDOM
292 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CORE_HAS_BOOST_SYSTEM
293 IMP_CORE_HAS_CGAL = _IMP_rotamer.IMP_CORE_HAS_CGAL
294 IMP_CORE_HAS_HDF5 = _IMP_rotamer.IMP_CORE_HAS_HDF5
295 IMPCORE_SHOW_WARNINGS = _IMP_rotamer.IMPCORE_SHOW_WARNINGS
296 import IMP.core
297 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_ALGEBRA
298 IMP_CONTAINER_HAS_IMP_BASE = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_BASE
299 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_CGAL
300 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_DISPLAY
301 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_KERNEL
302 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
303 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
304 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
305 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_RANDOM
306 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_CONTAINER_HAS_BOOST_SYSTEM
307 IMP_CONTAINER_HAS_CGAL = _IMP_rotamer.IMP_CONTAINER_HAS_CGAL
308 IMP_CONTAINER_HAS_HDF5 = _IMP_rotamer.IMP_CONTAINER_HAS_HDF5
309 IMPCONTAINER_SHOW_WARNINGS = _IMP_rotamer.IMPCONTAINER_SHOW_WARNINGS
310 import IMP.container
311 IMP_ATOM_HAS_IMP_BASE = _IMP_rotamer.IMP_ATOM_HAS_IMP_BASE
312 IMP_ATOM_HAS_IMP_CGAL = _IMP_rotamer.IMP_ATOM_HAS_IMP_CGAL
313 IMP_ATOM_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ATOM_HAS_IMP_KERNEL
314 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
315 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
316 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_RANDOM
317 IMP_ATOM_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ATOM_HAS_BOOST_REGEX
318 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ATOM_HAS_BOOST_SYSTEM
319 IMP_ATOM_HAS_CGAL = _IMP_rotamer.IMP_ATOM_HAS_CGAL
320 IMP_ATOM_HAS_HDF5 = _IMP_rotamer.IMP_ATOM_HAS_HDF5
321 IMPATOM_SHOW_WARNINGS = _IMP_rotamer.IMPATOM_SHOW_WARNINGS
322 IMP_ATOM_TYPE_INDEX = _IMP_rotamer.IMP_ATOM_TYPE_INDEX
323 IMP_RESIDUE_TYPE_INDEX = _IMP_rotamer.IMP_RESIDUE_TYPE_INDEX
324 IMP_HIERARCHY_TYPE_INDEX = _IMP_rotamer.IMP_HIERARCHY_TYPE_INDEX
325 import IMP.atom
326 IMP_ROTAMER_HAS_IMP_ALGEBRA = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_ALGEBRA
327 IMP_ROTAMER_HAS_IMP_BASE = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_BASE
328 IMP_ROTAMER_HAS_IMP_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CGAL
329 IMP_ROTAMER_HAS_IMP_CONTAINER = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_CONTAINER
330 IMP_ROTAMER_HAS_IMP_DISPLAY = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_DISPLAY
331 IMP_ROTAMER_HAS_IMP_KERNEL = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_KERNEL
332 IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR = _IMP_rotamer.IMP_ROTAMER_HAS_IMP_SCORE_FUNCTOR
333 IMP_ROTAMER_HAS_BOOST_FILESYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_FILESYSTEM
334 IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_PROGRAMOPTIONS
335 IMP_ROTAMER_HAS_BOOST_RANDOM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_RANDOM
336 IMP_ROTAMER_HAS_BOOST_REGEX = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_REGEX
337 IMP_ROTAMER_HAS_BOOST_SYSTEM = _IMP_rotamer.IMP_ROTAMER_HAS_BOOST_SYSTEM
338 IMP_ROTAMER_HAS_CGAL = _IMP_rotamer.IMP_ROTAMER_HAS_CGAL
339 IMP_ROTAMER_HAS_HDF5 = _IMP_rotamer.IMP_ROTAMER_HAS_HDF5
340 IMPROTAMER_SHOW_WARNINGS = _IMP_rotamer.IMPROTAMER_SHOW_WARNINGS
341 RotamerAngleTuples=list
342 _plural_types.append("RotamerAngleTuples")
343 _value_types.append("RotamerAngleTuple")
344 
345 ResidueRotamers=list
346 _plural_types.append("ResidueRotamers")
347 _value_types.append("ResidueRotamer")
348 
349 _object_types.append("RotamerLibrary")
350 
351 
352 def _object_cast_to_RotamerLibrary(*args):
353  """_object_cast_to_RotamerLibrary(Object o) -> RotamerLibrary"""
354  return _IMP_rotamer._object_cast_to_RotamerLibrary(*args)
355 _object_types.append("RotamerCalculator")
356 
357 
358 def _object_cast_to_RotamerCalculator(*args):
359  """_object_cast_to_RotamerCalculator(Object o) -> RotamerCalculator"""
360  return _IMP_rotamer._object_cast_to_RotamerCalculator(*args)
361 class RotamerAngleTuple(_object):
362  """Proxy of C++ IMP::rotamer::RotamerAngleTuple class"""
363  __swig_setmethods__ = {}
364  __setattr__ = lambda self, name, value: _swig_setattr(self, RotamerAngleTuple, name, value)
365  __swig_getmethods__ = {}
366  __getattr__ = lambda self, name: _swig_getattr(self, RotamerAngleTuple, name)
367  def __init__(self, *args):
368  """
369  __init__(IMP::rotamer::RotamerAngleTuple self) -> RotamerAngleTuple
370  __init__(IMP::rotamer::RotamerAngleTuple self, float chi1, float chi2, float chi3, float chi4, float probability) -> RotamerAngleTuple
371  """
372  this = _IMP_rotamer.new_RotamerAngleTuple(*args)
373  try: self.this.append(this)
374  except: self.this = this
375  def get_chi1(self):
376  """get_chi1(RotamerAngleTuple self) -> float"""
377  return _IMP_rotamer.RotamerAngleTuple_get_chi1(self)
378 
379  def get_chi2(self):
380  """get_chi2(RotamerAngleTuple self) -> float"""
381  return _IMP_rotamer.RotamerAngleTuple_get_chi2(self)
382 
383  def get_chi3(self):
384  """get_chi3(RotamerAngleTuple self) -> float"""
385  return _IMP_rotamer.RotamerAngleTuple_get_chi3(self)
386 
387  def get_chi4(self):
388  """get_chi4(RotamerAngleTuple self) -> float"""
389  return _IMP_rotamer.RotamerAngleTuple_get_chi4(self)
390 
391  def get_probability(self):
392  """get_probability(RotamerAngleTuple self) -> float"""
393  return _IMP_rotamer.RotamerAngleTuple_get_probability(self)
394 
395  def show(self, *args):
396  """
397  show(RotamerAngleTuple self, _ostream out=std::cout)
398  show(RotamerAngleTuple self)
399  """
400  return _IMP_rotamer.RotamerAngleTuple_show(self, *args)
401 
402  def __str__(self):
403  """__str__(RotamerAngleTuple self) -> std::string"""
404  return _IMP_rotamer.RotamerAngleTuple___str__(self)
405 
406  def __repr__(self):
407  """__repr__(RotamerAngleTuple self) -> std::string"""
408  return _IMP_rotamer.RotamerAngleTuple___repr__(self)
409 
410  __swig_destroy__ = _IMP_rotamer.delete_RotamerAngleTuple
411  __del__ = lambda self : None;
412 RotamerAngleTuple_swigregister = _IMP_rotamer.RotamerAngleTuple_swigregister
413 RotamerAngleTuple_swigregister(RotamerAngleTuple)
414 
415 class RotamerLibrary(IMP.base.Object):
416  """Proxy of C++ IMP::rotamer::RotamerLibrary class"""
417  __swig_setmethods__ = {}
418  for _s in [IMP.base.Object]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
419  __setattr__ = lambda self, name, value: _swig_setattr(self, RotamerLibrary, name, value)
420  __swig_getmethods__ = {}
421  for _s in [IMP.base.Object]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
422  __getattr__ = lambda self, name: _swig_getattr(self, RotamerLibrary, name)
423  def __init__(self, angle_step=10):
424  """
425  __init__(IMP::rotamer::RotamerLibrary self, unsigned int angle_step=10) -> RotamerLibrary
426  __init__(IMP::rotamer::RotamerLibrary self) -> RotamerLibrary
427  """
428  this = _IMP_rotamer.new_RotamerLibrary(angle_step)
429  try: self.this.append(this)
430  except: self.this = this
431  def get_rotamers(self, *args):
432  """get_rotamers(RotamerLibrary self, ResidueType residue, float phi, float psi, float probability_thr) -> IMP::rotamer::RotamerAngleTuples"""
433  return _IMP_rotamer.RotamerLibrary_get_rotamers(self, *args)
434 
435  def read_library_file(self, *args):
436  """read_library_file(RotamerLibrary self, std::string const & lib_file_name)"""
437  return _IMP_rotamer.RotamerLibrary_read_library_file(self, *args)
438 
439  def get_version_info(self):
440  """get_version_info(RotamerLibrary self) -> VersionInfo"""
441  return _IMP_rotamer.RotamerLibrary_get_version_info(self)
442 
443  def __str__(self):
444  """__str__(RotamerLibrary self) -> std::string"""
445  return _IMP_rotamer.RotamerLibrary___str__(self)
446 
447  def __repr__(self):
448  """__repr__(RotamerLibrary self) -> std::string"""
449  return _IMP_rotamer.RotamerLibrary___repr__(self)
450 
451  def get_from(o):
452  return _object_cast_to_RotamerLibrary(o)
453  get_from = staticmethod(get_from)
454 
455 RotamerLibrary_swigregister = _IMP_rotamer.RotamerLibrary_swigregister
456 RotamerLibrary_swigregister(RotamerLibrary)
457 
458 class ResidueRotamer(_object):
459  """Proxy of C++ IMP::rotamer::ResidueRotamer class"""
460  __swig_setmethods__ = {}
461  __setattr__ = lambda self, name, value: _swig_setattr(self, ResidueRotamer, name, value)
462  __swig_getmethods__ = {}
463  __getattr__ = lambda self, name: _swig_getattr(self, ResidueRotamer, name)
464  def __init__(self, *args):
465  """
466  __init__(IMP::rotamer::ResidueRotamer self, ResidueType rt=UNK) -> ResidueRotamer
467  __init__(IMP::rotamer::ResidueRotamer self) -> ResidueRotamer
468  """
469  this = _IMP_rotamer.new_ResidueRotamer(*args)
470  try: self.this.append(this)
471  except: self.this = this
472  def get_coordinates(self, *args):
473  """get_coordinates(ResidueRotamer self, unsigned int index, AtomType at) -> Vector3D"""
474  return _IMP_rotamer.ResidueRotamer_get_coordinates(self, *args)
475 
476  def get_number_of_cases(self, *args):
477  """get_number_of_cases(ResidueRotamer self, AtomType at) -> unsigned int"""
478  return _IMP_rotamer.ResidueRotamer_get_number_of_cases(self, *args)
479 
480  def get_atom_exists(self, *args):
481  """get_atom_exists(ResidueRotamer self, AtomType at) -> bool"""
482  return _IMP_rotamer.ResidueRotamer_get_atom_exists(self, *args)
483 
484  def get_size(self):
485  """get_size(ResidueRotamer self) -> unsigned int"""
486  return _IMP_rotamer.ResidueRotamer_get_size(self)
487 
488  def get_probability(self, *args):
489  """get_probability(ResidueRotamer self, unsigned int index) -> double"""
490  return _IMP_rotamer.ResidueRotamer_get_probability(self, *args)
491 
492  def show(self, *args):
493  """
494  show(ResidueRotamer self, _ostream out=std::cout)
495  show(ResidueRotamer self)
496  """
497  return _IMP_rotamer.ResidueRotamer_show(self, *args)
498 
499  def __str__(self):
500  """__str__(ResidueRotamer self) -> std::string"""
501  return _IMP_rotamer.ResidueRotamer___str__(self)
502 
503  def __repr__(self):
504  """__repr__(ResidueRotamer self) -> std::string"""
505  return _IMP_rotamer.ResidueRotamer___repr__(self)
506 
507  __swig_destroy__ = _IMP_rotamer.delete_ResidueRotamer
508  __del__ = lambda self : None;
509 ResidueRotamer_swigregister = _IMP_rotamer.ResidueRotamer_swigregister
510 ResidueRotamer_swigregister(ResidueRotamer)
511 
512 class RotamerCalculator(IMP.base.Object):
513  """Proxy of C++ IMP::rotamer::RotamerCalculator class"""
514  __swig_setmethods__ = {}
515  for _s in [IMP.base.Object]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
516  __setattr__ = lambda self, name, value: _swig_setattr(self, RotamerCalculator, name, value)
517  __swig_getmethods__ = {}
518  for _s in [IMP.base.Object]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
519  __getattr__ = lambda self, name: _swig_getattr(self, RotamerCalculator, name)
520  def __init__(self, *args):
521  """__init__(IMP::rotamer::RotamerCalculator self, RotamerLibrary rl) -> RotamerCalculator"""
522  this = _IMP_rotamer.new_RotamerCalculator(*args)
523  try: self.this.append(this)
524  except: self.this = this
525  def get_rotamer(self, *args):
526  """get_rotamer(RotamerCalculator self, Residue rd, double thr) -> ResidueRotamer"""
527  return _IMP_rotamer.RotamerCalculator_get_rotamer(self, *args)
528 
529  def get_version_info(self):
530  """get_version_info(RotamerCalculator self) -> VersionInfo"""
531  return _IMP_rotamer.RotamerCalculator_get_version_info(self)
532 
533  def transform(self, *args):
534  """transform(RotamerCalculator self, Hierarchy protein, PairScore score, double thr, double K, int num_iter)"""
535  return _IMP_rotamer.RotamerCalculator_transform(self, *args)
536 
537  def __str__(self):
538  """__str__(RotamerCalculator self) -> std::string"""
539  return _IMP_rotamer.RotamerCalculator___str__(self)
540 
541  def __repr__(self):
542  """__repr__(RotamerCalculator self) -> std::string"""
543  return _IMP_rotamer.RotamerCalculator___repr__(self)
544 
545  def get_from(o):
546  return _object_cast_to_RotamerCalculator(o)
547  get_from = staticmethod(get_from)
548 
549 RotamerCalculator_swigregister = _IMP_rotamer.RotamerCalculator_swigregister
550 RotamerCalculator_swigregister(RotamerCalculator)
551 
552 
553 def get_module_version():
554  """get_module_version() -> std::string const"""
555  return _IMP_rotamer.get_module_version()
556 
557 def get_example_path(*args):
558  """get_example_path(std::string fname) -> std::string"""
559  return _IMP_rotamer.get_example_path(*args)
560 
561 def get_data_path(*args):
562  """get_data_path(std::string fname) -> std::string"""
563  return _IMP_rotamer.get_data_path(*args)
564 import _version_check
565 _version_check.check_version(get_module_version())
566 
567 # This file is compatible with both classic and new-style classes.
568 
569 
std::string get_data_path(std::string file_name)
Return the full path to installed data.
Various classes to hold sets of particles.
Make CGAL functionality available to IMP.
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
Definition: exception.h:73
Low level functionality (logging, error handling, profiling, command line flags etc) that is used by ...
Composable functors to implement scores via compile-time composition.
void transform(Hierarchy h, const algebra::Transformation3D &tr)
Transform a hierarchy. This is aware of rigid bodies.
Base functionality and abstract base classes for representation, scoring and sampling.
std::string get_example_path(std::string file_name)
Return the path to installed example data for this module.
Common base class for heavy weight IMP objects.
Definition: Object.h:106
Basic functionality that is expected to be used by a wide variety of IMP users.
General purpose algebraic and geometric methods that are expected to be used by a wide variety of IMP...
void show(Hierarchy h, std::ostream &out=std::cout)
Print out a molecular hierarchy.
Output IMP model data in various file formats.
CheckLevel get_check_level()
Get the current audit mode.
Definition: exception.h:81
Functionality for loading, creating, manipulating and scoring atomic structures.