envelope_penetration.h File Reference

functions for calculation envelope penetration More...

#include <IMP/em/em_config.h>
#include "DensityMap.h"
#include <IMP/kernel/Particle.h>

Include dependency graph for envelope_penetration.h:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Namespaces
	IMP
	Synonym for IMP::kernel.
	IMP::em
	Basic utilities for handling cryo-electron microscopy 3D density maps.

Functions
long	IMP::em::get_number_of_particles_outside_of_the_density (DensityMap *dmap, const kernel::Particles &ps, const IMP::algebra::Transformation3D &t=IMP::algebra::get_identity_transformation_3d(), float thr=0.0)
	Get the number of particles that are outside of the density. More...
Ints	IMP::em::get_numbers_of_particles_outside_of_the_density (DensityMap *dmap, const kernel::Particles &ps, const IMP::algebra::Transformation3Ds &transformations, float thr=0.0)
	Get numbers of particles (mult transforms) that are outside the density. More...
double	IMP::em::get_percentage_of_voxels_covered_by_particles (DensityMap *dmap, const kernel::Particles &ps, float smoothing_radius=3., const IMP::algebra::Transformation3D &t=IMP::algebra::get_identity_transformation_3d(), float thr=0.0)
	Get the number of density voxels that are not covered by particles. More...

Detailed Description

functions for calculation envelope penetration

Copyright 2007-2014 IMP Inventors. All rights reserved.

Definition in file envelope_penetration.h.