IMP  2.3.0
The Integrative Modeling Platform
envelope_penetration.h File Reference

functions for calculation envelope penetration More...

#include <IMP/em/em_config.h>
#include "DensityMap.h"
#include <IMP/kernel/Particle.h>
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Namespaces

 IMP
 Synonym for IMP::kernel.
 
 IMP::em
 Basic utilities for handling cryo-electron microscopy 3D density maps.
 

Functions

long IMP::em::get_number_of_particles_outside_of_the_density (DensityMap *dmap, const kernel::Particles &ps, const IMP::algebra::Transformation3D &t=IMP::algebra::get_identity_transformation_3d(), float thr=0.0)
 Get the number of particles that are outside of the density. More...
 
Ints IMP::em::get_numbers_of_particles_outside_of_the_density (DensityMap *dmap, const kernel::Particles &ps, const IMP::algebra::Transformation3Ds &transformations, float thr=0.0)
 Get numbers of particles (mult transforms) that are outside the density. More...
 
double IMP::em::get_percentage_of_voxels_covered_by_particles (DensityMap *dmap, const kernel::Particles &ps, float smoothing_radius=3., const IMP::algebra::Transformation3D &t=IMP::algebra::get_identity_transformation_3d(), float thr=0.0)
 Get the number of density voxels that are not covered by particles. More...
 

Detailed Description

functions for calculation envelope penetration

Copyright 2007-2014 IMP Inventors. All rights reserved.

Definition in file envelope_penetration.h.