IMP  2.2.0
The Integrative Modeling Platform
multifit.h
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1 /**
2  * \file IMP/multifit.h
3  * \brief A container which has pairs which ensure a set is connected
4  *
5  * Copyright 2007-2014 IMP Inventors. All rights reserved.
6  */
7 
8 #ifndef IMP_MULTIFIT_H
9 #define IMP_MULTIFIT_H
10 #include <IMP/multifit/AlignmentParams.h>
11 #include <IMP/multifit/ComplementarityRestraint.h>
12 #include <IMP/multifit/DataPointsAssignment.h>
13 #include <IMP/multifit/DensityDataPoints.h>
14 #include <IMP/multifit/FittingSolutionRecord.h>
15 #include <IMP/multifit/GeometricHash.h>
16 #include <IMP/multifit/RadiusOfGyrationRestraint.h>
17 #include <IMP/multifit/SettingsData.h>
18 #include <IMP/multifit/WeightedExcludedVolumeRestraint.h>
19 #include <IMP/multifit/anchor_graph.h>
20 #include <IMP/multifit/anchor_utilities.h>
21 #include <IMP/multifit/anchors_reader.h>
22 #include <IMP/multifit/coarse_molecule.h>
23 #include <IMP/multifit/connolly_surface.h>
24 #include <IMP/multifit/density_analysis.h>
25 #include <IMP/multifit/ensemble_analysis.h>
26 #include <IMP/multifit/fft_based_rigid_fitting.h>
27 #include <IMP/multifit/fitting_solutions_reader_writer.h>
28 #include <IMP/multifit/fitting_states.h>
29 #include <IMP/multifit/fitting_tools.h>
30 #include <IMP/multifit/fitting_utils.h>
31 #include <IMP/multifit/merge_tree_utils.h>
32 #include <IMP/multifit/path_reader_writer.h>
33 #include <IMP/multifit/pca_based_rigid_fitting.h>
34 #include <IMP/multifit/protein_anchors_mapping_reader.h>
35 #include <IMP/multifit/proteomics_em_alignment_atomic.h>
36 #include <IMP/multifit/proteomics_reader.h>
37 #include <IMP/multifit/weighted_excluded_volume.h>
38 #endif /* IMP_MULTIFIT_H */
fitting_tools.h
tools for handling fitting records
merge_tree_utils.h
proteomics_reader.h
handles reading of proteomics data
fitting_utils.h
fitting utilities
fitting_solutions_reader_writer.h
handles reading and writing MultiFit fitting solutions file
anchor_utilities.h
Common functions in anchor calculations.
ensemble_analysis.h
protein_anchors_mapping_reader.h
handles reading matches between a protein and its anchors
weighted_excluded_volume.h
handles low resolution weighted excluded volume calculation.
GeometricHash.h
Geometric Hashing class.
SettingsData.h
stored multifit settings data
fitting_states.h
Fitting states.
DataPointsAssignment.h
Tools for data points assignment, after anchor point segmentation.
anchor_graph.h
anchor graph utilities
ComplementarityRestraint.h
Calculate weighted excluded volume between rigid bodies.
pca_based_rigid_fitting.h
preforms rigid fitting between a set of particles and a density map
path_reader_writer.h
Read and write paths.
FittingSolutionRecord.h
stored a multifit fitting solution
AlignmentParams.h
Parameters for alignments.
coarse_molecule.h
coarsen molecule by clustering
density_analysis.h
density analysis tools, such as segmentation
WeightedExcludedVolumeRestraint.h
Calculate weighted excluded volume between rigid bodies.
RadiusOfGyrationRestraint.h
radius of gyration restraint.
proteomics_em_alignment_atomic.h
align proteomics graph to em density map
fft_based_rigid_fitting.h
FFT based fitting.
connolly_surface.h
Generate surface for a set of atoms.
DensityDataPoints.h
Handling of data for anchor points segmentation.
anchors_reader.h
handles reading of anchors data