IMP  2.1.1
The Integrative Modeling Platform
setup.py
1 ## \example kernel/setup.py
2 # Standard setup code.
3 
4 import IMP.core
5 
6 
7 def create_model_and_particles():
8  m = IMP.kernel.Model()
9  ps = [IMP.kernel.Particle(m) for i in range(0, 100)]
10  bb = IMP.algebra.BoundingBox3D(IMP.algebra.Vector3D(0, 0, 0),
11  IMP.algebra.Vector3D(10, 10, 10))
12  for p in ps:
13  d = IMP.core.XYZR.setup_particle(
14  p, IMP.algebra.Sphere3D(IMP.algebra.get_random_vector_in(bb), 1))
15  d.set_coordinates_are_optimized(True)
16  sc = IMP.container.ListSingletonContainer(ps)
17  return (m, sc)
IMP::algebra::get_random_vector_in
Vector3D get_random_vector_in(const Cylinder3D &c)
Generate a random vector in a cylinder with uniform density.
IMP::core::XYZR::setup_particle
static XYZR setup_particle(kernel::Model *m, ParticleIndex pi)
Definition: XYZR.h:48
IMP::kernel::Particle
Class to handle individual model particles.
Definition: kernel/declare_Particle.h:34
IMP::core
See IMP.core for more information.
Definition: AngleRestraint.h:19
IMP::kernel::Model
Class for storing model, its restraints, constraints, and particles.
Definition: kernel/declare_Model.h:72