score_functor/__init__.py

# This file was automatically generated by SWIG (http://www.swig.org).
# Version 2.0.11
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.





from sys import version_info
if version_info >= (2,6,0):
    def swig_import_helper():
        from os.path import dirname
        import imp
        fp = None
        try:
            fp, pathname, description = imp.find_module('_IMP_score_functor', [dirname(__file__)])
        except ImportError:
            import _IMP_score_functor
            return _IMP_score_functor
        if fp is not None:
            try:
                _mod = imp.load_module('_IMP_score_functor', fp, pathname, description)
            finally:
                fp.close()
            return _mod
    _IMP_score_functor = swig_import_helper()
    del swig_import_helper
else:
    import _IMP_score_functor
del version_info
try:
    _swig_property = property
except NameError:
    pass # Python < 2.2 doesn't have 'property'.
def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
    if (name == "thisown"): return self.this.own(value)
    if (name == "this"):
        if type(value).__name__ == 'SwigPyObject':
            self.__dict__[name] = value
            return
    method = class_type.__swig_setmethods__.get(name,None)
    if method: return method(self,value)
    if (not static):
        self.__dict__[name] = value
    else:
        raise AttributeError("You cannot add attributes to %s" % self)

def _swig_setattr(self,class_type,name,value):
    return _swig_setattr_nondynamic(self,class_type,name,value,0)

def _swig_getattr(self,class_type,name):
    if (name == "thisown"): return self.this.own()
    method = class_type.__swig_getmethods__.get(name,None)
    if method: return method(self)
    raise AttributeError(name)

def _swig_repr(self):
    try: strthis = "proxy of " + self.this.__repr__()
    except: strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)

try:
    _object = object
    _newclass = 1
except AttributeError:
    class _object : pass
    _newclass = 0


try:
    import weakref
    weakref_proxy = weakref.proxy
except:
    weakref_proxy = lambda x: x


class IMP_SCORE_FUNCTOR_SwigPyIterator(_object):
    """Proxy of C++ swig::IMP_SCORE_FUNCTOR_SwigPyIterator class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, IMP_SCORE_FUNCTOR_SwigPyIterator, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, IMP_SCORE_FUNCTOR_SwigPyIterator, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _IMP_score_functor.delete_IMP_SCORE_FUNCTOR_SwigPyIterator
    __del__ = lambda self : None;
    def value(self):
        """value(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_value(self)

    def incr(self, n=1):
        """
        incr(IMP_SCORE_FUNCTOR_SwigPyIterator self, size_t n=1) -> IMP_SCORE_FUNCTOR_SwigPyIterator
        incr(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> IMP_SCORE_FUNCTOR_SwigPyIterator
        """
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_incr(self, n)

    def decr(self, n=1):
        """
        decr(IMP_SCORE_FUNCTOR_SwigPyIterator self, size_t n=1) -> IMP_SCORE_FUNCTOR_SwigPyIterator
        decr(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> IMP_SCORE_FUNCTOR_SwigPyIterator
        """
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_decr(self, n)

    def distance(self, *args):
        """distance(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> ptrdiff_t"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_distance(self, *args)

    def equal(self, *args):
        """equal(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> bool"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_equal(self, *args)

    def copy(self):
        """copy(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_copy(self)

    def next(self):
        """next(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_next(self)

    def __next__(self):
        """__next__(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___next__(self)

    def previous(self):
        """previous(IMP_SCORE_FUNCTOR_SwigPyIterator self) -> PyObject *"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_previous(self)

    def advance(self, *args):
        """advance(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_advance(self, *args)

    def __eq__(self, *args):
        """__eq__(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> bool"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___eq__(self, *args)

    def __ne__(self, *args):
        """__ne__(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> bool"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___ne__(self, *args)

    def __iadd__(self, *args):
        """__iadd__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___iadd__(self, *args)

    def __isub__(self, *args):
        """__isub__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___isub__(self, *args)

    def __add__(self, *args):
        """__add__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator"""
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___add__(self, *args)

    def __sub__(self, *args):
        """
        __sub__(IMP_SCORE_FUNCTOR_SwigPyIterator self, ptrdiff_t n) -> IMP_SCORE_FUNCTOR_SwigPyIterator
        __sub__(IMP_SCORE_FUNCTOR_SwigPyIterator self, IMP_SCORE_FUNCTOR_SwigPyIterator x) -> ptrdiff_t
        """
        return _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator___sub__(self, *args)

    def __iter__(self): return self
IMP_SCORE_FUNCTOR_SwigPyIterator_swigregister = _IMP_score_functor.IMP_SCORE_FUNCTOR_SwigPyIterator_swigregister
IMP_SCORE_FUNCTOR_SwigPyIterator_swigregister(IMP_SCORE_FUNCTOR_SwigPyIterator)

_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]

IMP_DEBUG = _IMP_score_functor.IMP_DEBUG
IMP_RELEASE = _IMP_score_functor.IMP_RELEASE
IMP_SILENT = _IMP_score_functor.IMP_SILENT
IMP_PROGRESS = _IMP_score_functor.IMP_PROGRESS
IMP_TERSE = _IMP_score_functor.IMP_TERSE
IMP_VERBOSE = _IMP_score_functor.IMP_VERBOSE
IMP_MEMORY = _IMP_score_functor.IMP_MEMORY
IMP_NONE = _IMP_score_functor.IMP_NONE
IMP_USAGE = _IMP_score_functor.IMP_USAGE
IMP_INTERNAL = _IMP_score_functor.IMP_INTERNAL
IMP_BASE_HAS_LOG4CXX = _IMP_score_functor.IMP_BASE_HAS_LOG4CXX
IMP_COMPILER_HAS_AUTO = _IMP_score_functor.IMP_COMPILER_HAS_AUTO
IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_score_functor.IMP_COMPILER_HAS_DEBUG_VECTOR
IMP_BASE_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_BASE_HAS_BOOST_RANDOM
IMP_BASE_HAS_GPERFTOOLS = _IMP_score_functor.IMP_BASE_HAS_GPERFTOOLS
IMP_BASE_HAS_TCMALLOC_HEAPCHECKER = _IMP_score_functor.IMP_BASE_HAS_TCMALLOC_HEAPCHECKER
IMP_BASE_HAS_TCMALLOC_HEAPPROFILER = _IMP_score_functor.IMP_BASE_HAS_TCMALLOC_HEAPPROFILER
IMPBASE_SHOW_WARNINGS = _IMP_score_functor.IMPBASE_SHOW_WARNINGS
import sys
class _DirectorObjects(object):
    """@internal Simple class to keep references to director objects
       to prevent premature deletion."""
    def __init__(self):
        self._objects = []
    def register(self, obj):
        """Take a reference to a director object; will only work for
           refcounted C++ classes"""
        if hasattr(obj, 'get_ref_count'):
            self._objects.append(obj)
    def cleanup(self):
        """Only drop our reference and allow cleanup by Python if no other
           Python references exist (we hold 3 references: one in self._objects,
           one in x, and one in the argument list for getrefcount) *and* no
           other C++ references exist (the Python object always holds one)"""
        objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
                                         or x.get_ref_count() > 1]
        
        
        self._objects = objs
    def get_object_count(self):
        """Get number of director objects (useful for testing only)"""
        return len(self._objects)
_director_objects = _DirectorObjects()

DEFAULT_CHECK = _IMP_score_functor.DEFAULT_CHECK
NONE = _IMP_score_functor.NONE
USAGE = _IMP_score_functor.USAGE
USAGE_AND_INTERNAL = _IMP_score_functor.USAGE_AND_INTERNAL

def set_check_level(*args):
  """set_check_level(IMP::base::CheckLevel tf)"""
  return _IMP_score_functor.set_check_level(*args)

def get_check_level():
  """get_check_level() -> IMP::base::CheckLevel"""
  return _IMP_score_functor.get_check_level()
class _ostream(_object):
    """Proxy of C++ std::ostream class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, _ostream, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, _ostream, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
    __repr__ = _swig_repr
    def write(self, *args):
        """write(_ostream self, char const * osa_buf)"""
        return _IMP_score_functor._ostream_write(self, *args)

_ostream_swigregister = _IMP_score_functor._ostream_swigregister
_ostream_swigregister(_ostream)

IMP_COMPILER_HAS_OVERRIDE = _IMP_score_functor.IMP_COMPILER_HAS_OVERRIDE
IMP_COMPILER_HAS_FINAL = _IMP_score_functor.IMP_COMPILER_HAS_FINAL
IMP_HAS_NOEXCEPT = _IMP_score_functor.IMP_HAS_NOEXCEPT
import IMP.base
IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_score_functor.IMP_CGAL_HAS_BOOST_FILESYSTEM
IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
IMP_CGAL_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_CGAL_HAS_BOOST_RANDOM
IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_CGAL_HAS_BOOST_SYSTEM
IMPCGAL_SHOW_WARNINGS = _IMP_score_functor.IMPCGAL_SHOW_WARNINGS
import IMP.cgal
IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_score_functor.IMP_ALGEBRA_HAS_IMP_CGAL
IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_RANDOM
IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_ALGEBRA_HAS_BOOST_SYSTEM
IMP_ALGEBRA_HAS_CGAL = _IMP_score_functor.IMP_ALGEBRA_HAS_CGAL
IMP_ALGEBRA_HAS_ANN = _IMP_score_functor.IMP_ALGEBRA_HAS_ANN
IMPALGEBRA_SHOW_WARNINGS = _IMP_score_functor.IMPALGEBRA_SHOW_WARNINGS
import IMP.algebra
IMP_KERNEL_HAS_IMP_CGAL = _IMP_score_functor.IMP_KERNEL_HAS_IMP_CGAL
IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS
IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_KERNEL_HAS_BOOST_RANDOM
IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_KERNEL_HAS_BOOST_SYSTEM
IMP_KERNEL_HAS_CGAL = _IMP_score_functor.IMP_KERNEL_HAS_CGAL
IMPKERNEL_SHOW_WARNINGS = _IMP_score_functor.IMPKERNEL_SHOW_WARNINGS
import IMP.kernel
IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_score_functor.IMP_SCORE_FUNCTOR_HAS_CGAL
IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_score_functor.IMPSCOREFUNCTOR_SHOW_WARNINGS
class Score(_object):
    """Proxy of C++ IMP::score_functor::Score class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, Score, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, Score, name)
    __repr__ = _swig_repr
    def __init__(self): 
        """__init__(IMP::score_functor::Score self) -> Score"""
        this = _IMP_score_functor.new_Score()
        try: self.this.append(this)
        except: self.this = this
    def get_inputs(self, *args):
        """get_inputs(Score self, Model m, IMP::kernel::ParticleIndexes const & pis) -> IMP::kernel::ModelObjectsTemp"""
        return _IMP_score_functor.Score_get_inputs(self, *args)

    def show(self, *args):
        """show(Score self, _ostream arg2)"""
        return _IMP_score_functor.Score_show(self, *args)

    __swig_destroy__ = _IMP_score_functor.delete_Score
    __del__ = lambda self : None;
Score_swigregister = _IMP_score_functor.Score_swigregister
Score_swigregister(Score)

class _DopeBase(Score):
    """Proxy of C++ IMP::score_functor::Statistical<(IMP::score_functor::DopeType,false,true)> class"""
    __swig_setmethods__ = {}
    for _s in [Score]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, _DopeBase, name, value)
    __swig_getmethods__ = {}
    for _s in [Score]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, _DopeBase, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::score_functor::Statistical<(IMP::score_functor::DopeType,false,true)> self, IntKey k, double threshold, TextInput data_file) -> _DopeBase
        __init__(IMP::score_functor::Statistical<(IMP::score_functor::DopeType,false,true)> self, IntKey k, double threshold, TextInput data_file, unsigned int shift) -> _DopeBase
        """
        this = _IMP_score_functor.new__DopeBase(*args)
        try: self.this.append(this)
        except: self.this = this
    def get_score(self, *args):
        """get_score(_DopeBase self, Model m, IMP::kernel::ParticleIndexPair const & pp, double distance) -> double"""
        return _IMP_score_functor._DopeBase_get_score(self, *args)

    def get_score_and_derivative(self, *args):
        """
        get_score_and_derivative(_DopeBase self, Model m, IMP::base::Array< 2,IMP::kernel::ParticleIndex,IMP::kernel::ParticleIndex > const & pp, 
            double distance) -> IMP::DerivativePair
        """
        return _IMP_score_functor._DopeBase_get_score_and_derivative(self, *args)

    def get_maximum_range(self, *args):
        """get_maximum_range(_DopeBase self, Model arg2, IMP::kernel::ParticleIndexPair const & arg3) -> double"""
        return _IMP_score_functor._DopeBase_get_maximum_range(self, *args)

    def get_is_trivially_zero(self, *args):
        """get_is_trivially_zero(_DopeBase self, Model m, IMP::kernel::ParticleIndexPair const & p, double squared_distance) -> bool"""
        return _IMP_score_functor._DopeBase_get_is_trivially_zero(self, *args)

    __swig_destroy__ = _IMP_score_functor.delete__DopeBase
    __del__ = lambda self : None;
_DopeBase_swigregister = _IMP_score_functor._DopeBase_swigregister
_DopeBase_swigregister(_DopeBase)

class Dope(_DopeBase):
    """Proxy of C++ IMP::score_functor::Dope class"""
    __swig_setmethods__ = {}
    for _s in [_DopeBase]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, Dope, name, value)
    __swig_getmethods__ = {}
    for _s in [_DopeBase]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, Dope, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::score_functor::Dope self, double threshold=std::numeric_limits< double >::max()) -> Dope
        __init__(IMP::score_functor::Dope self) -> Dope
        __init__(IMP::score_functor::Dope self, double threshold, TextInput data_file) -> Dope
        """
        this = _IMP_score_functor.new_Dope(*args)
        try: self.this.append(this)
        except: self.this = this
    def get_dope_type_key():
        """get_dope_type_key() -> IntKey"""
        return _IMP_score_functor.Dope_get_dope_type_key()

    if _newclass:get_dope_type_key = staticmethod(get_dope_type_key)
    __swig_getmethods__["get_dope_type_key"] = lambda x: get_dope_type_key
    __swig_destroy__ = _IMP_score_functor.delete_Dope
    __del__ = lambda self : None;
Dope_swigregister = _IMP_score_functor.Dope_swigregister
Dope_swigregister(Dope)

def Dope_get_dope_type_key():
  """Dope_get_dope_type_key() -> IntKey"""
  return _IMP_score_functor.Dope_get_dope_type_key()

class UnaryFunctionEvaluate(Score):
    """Proxy of C++ IMP::score_functor::UnaryFunctionEvaluate class"""
    __swig_setmethods__ = {}
    for _s in [Score]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, UnaryFunctionEvaluate, name, value)
    __swig_getmethods__ = {}
    for _s in [Score]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, UnaryFunctionEvaluate, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """__init__(IMP::score_functor::UnaryFunctionEvaluate self, UnaryFunction uf) -> UnaryFunctionEvaluate"""
        this = _IMP_score_functor.new_UnaryFunctionEvaluate(*args)
        try: self.this.append(this)
        except: self.this = this
    __swig_destroy__ = _IMP_score_functor.delete_UnaryFunctionEvaluate
    __del__ = lambda self : None;
UnaryFunctionEvaluate_swigregister = _IMP_score_functor.UnaryFunctionEvaluate_swigregister
UnaryFunctionEvaluate_swigregister(UnaryFunctionEvaluate)


def get_module_version():
  """get_module_version() -> std::string const"""
  return _IMP_score_functor.get_module_version()

def get_example_path(*args):
  """get_example_path(std::string fname) -> std::string"""
  return _IMP_score_functor.get_example_path(*args)

def get_data_path(*args):
  """get_data_path(std::string fname) -> std::string"""
  return _IMP_score_functor.get_data_path(*args)
import _version_check
_version_check.check_version(get_module_version())

# This file is compatible with both classic and new-style classes.