domino/utility.h File Reference

Functions to get report statistics about the used attributes. More...

#include <IMP/domino/domino_config.h>
#include "Assignment.h"
#include "Subset.h"
#include "particle_states.h"
#include <IMP/kernel/Particle.h>
#include <IMP/SingletonContainer.h>
#include <IMP/RestraintSet.h>
#include <IMP/kernel/Model.h>
#include <IMP/core/internal/CoreClosePairContainer.h>
#include <IMP/display/Writer.h>
#include <IMP/dependency_graph.h>
#include <IMP/statistics/metric_clustering.h>
#include <RMF/HDF5/Group.h>

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Namespaces
	IMP
	All IMP::kernel code is brought into the IMP namespace.
	IMP::domino
	See IMP.domino for more information.
	IMP::kernel
	See IMP.kernel for more information.

Functions
double	IMP::domino::get_distance_if_smaller_than (const Subset &s, const Assignment &a, const Assignment &b, ParticleStatesTable *pst, const statistics::Metrics &metrics, double max)
algebra::VectorKD	IMP::domino::get_embedding (const Subset &s, const Assignment &a, ParticleStatesTable *pst)
	Return an embedding for an assignment.
Ints	IMP::domino::get_index (const kernel::ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
Assignment	IMP::domino::get_nearest_assignment (const Subset &s, const algebra::VectorKD &embedding, ParticleStatesTable *pst)
	Return the nearest assignment from an embedding.
Ints	IMP::domino::get_partial_index (const kernel::ParticlesTemp &particles, const Subset &subset, const Subsets &excluded)
kernel::ParticlePairsTemp	IMP::domino::get_possible_interactions (const kernel::ParticlesTemp &ps, double max_distance, ParticleStatesTable *pst)

Debug tools
We provide a number of different functions for helpering optimize and understand domino-based sampling. These functions are expose part of the implementation and are liable to change without notice.
void	IMP::domino::load_particle_states (const Subset &s, const Assignment &ss, const ParticleStatesTable *pst)
kernel::RestraintsTemp	IMP::domino::get_restraints (const Subset &s, const ParticleStatesTable *pst, const DependencyGraph &dg, kernel::RestraintSet *rs)

Detailed Description

Copyright 2007-2013 IMP Inventors. All rights reserved.

Definition in file domino/utility.h.