11 from sys
import version_info
12 if version_info >= (2,6,0):
13 def swig_import_helper():
14 from os.path
import dirname
18 fp, pathname, description = imp.find_module(
'_IMP_symmetry', [dirname(__file__)])
24 _mod = imp.load_module(
'_IMP_symmetry', fp, pathname, description)
28 _IMP_symmetry = swig_import_helper()
29 del swig_import_helper
34 _swig_property = property
37 def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
38 if (name ==
"thisown"):
return self.this.own(value)
40 if type(value).__name__ ==
'SwigPyObject':
41 self.__dict__[name] = value
43 method = class_type.__swig_setmethods__.get(name,
None)
44 if method:
return method(self,value)
46 self.__dict__[name] = value
48 raise AttributeError(
"You cannot add attributes to %s" % self)
50 def _swig_setattr(self,class_type,name,value):
51 return _swig_setattr_nondynamic(self,class_type,name,value,0)
53 def _swig_getattr(self,class_type,name):
54 if (name ==
"thisown"):
return self.this.own()
55 method = class_type.__swig_getmethods__.get(name,
None)
56 if method:
return method(self)
57 raise AttributeError(name)
60 try: strthis =
"proxy of " + self.this.__repr__()
62 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
67 except AttributeError:
74 weakref_proxy = weakref.proxy
76 weakref_proxy =
lambda x: x
79 class IMP_SYMMETRY_SwigPyIterator(_object):
80 """Proxy of C++ swig::IMP_SYMMETRY_SwigPyIterator class"""
81 __swig_setmethods__ = {}
82 __setattr__ =
lambda self, name, value: _swig_setattr(self, IMP_SYMMETRY_SwigPyIterator, name, value)
83 __swig_getmethods__ = {}
84 __getattr__ =
lambda self, name: _swig_getattr(self, IMP_SYMMETRY_SwigPyIterator, name)
85 def __init__(self, *args, **kwargs):
raise AttributeError(
"No constructor defined - class is abstract")
87 __swig_destroy__ = _IMP_symmetry.delete_IMP_SYMMETRY_SwigPyIterator
88 __del__ =
lambda self :
None;
90 """value(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
91 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_value(self)
95 incr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator
96 incr(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator
98 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_incr(self, n)
102 decr(IMP_SYMMETRY_SwigPyIterator self, size_t n=1) -> IMP_SYMMETRY_SwigPyIterator
103 decr(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator
105 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_decr(self, n)
107 def distance(self, *args):
108 """distance(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t"""
109 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_distance(self, *args)
111 def equal(self, *args):
112 """equal(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
113 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_equal(self, *args)
116 """copy(IMP_SYMMETRY_SwigPyIterator self) -> IMP_SYMMETRY_SwigPyIterator"""
117 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_copy(self)
120 """next(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
121 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_next(self)
124 """__next__(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
125 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___next__(self)
128 """previous(IMP_SYMMETRY_SwigPyIterator self) -> PyObject *"""
129 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_previous(self)
131 def advance(self, *args):
132 """advance(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
133 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_advance(self, *args)
135 def __eq__(self, *args):
136 """__eq__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
137 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___eq__(self, *args)
139 def __ne__(self, *args):
140 """__ne__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> bool"""
141 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___ne__(self, *args)
143 def __iadd__(self, *args):
144 """__iadd__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
145 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___iadd__(self, *args)
147 def __isub__(self, *args):
148 """__isub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
149 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___isub__(self, *args)
151 def __add__(self, *args):
152 """__add__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator"""
153 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___add__(self, *args)
155 def __sub__(self, *args):
157 __sub__(IMP_SYMMETRY_SwigPyIterator self, ptrdiff_t n) -> IMP_SYMMETRY_SwigPyIterator
158 __sub__(IMP_SYMMETRY_SwigPyIterator self, IMP_SYMMETRY_SwigPyIterator x) -> ptrdiff_t
160 return _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator___sub__(self, *args)
162 def __iter__(self):
return self
163 IMP_SYMMETRY_SwigPyIterator_swigregister = _IMP_symmetry.IMP_SYMMETRY_SwigPyIterator_swigregister
164 IMP_SYMMETRY_SwigPyIterator_swigregister(IMP_SYMMETRY_SwigPyIterator)
171 IMP_DEBUG = _IMP_symmetry.IMP_DEBUG
172 IMP_RELEASE = _IMP_symmetry.IMP_RELEASE
173 IMP_SILENT = _IMP_symmetry.IMP_SILENT
174 IMP_PROGRESS = _IMP_symmetry.IMP_PROGRESS
175 IMP_TERSE = _IMP_symmetry.IMP_TERSE
176 IMP_VERBOSE = _IMP_symmetry.IMP_VERBOSE
177 IMP_MEMORY = _IMP_symmetry.IMP_MEMORY
178 IMP_NONE = _IMP_symmetry.IMP_NONE
179 IMP_USAGE = _IMP_symmetry.IMP_USAGE
180 IMP_INTERNAL = _IMP_symmetry.IMP_INTERNAL
181 IMP_BASE_HAS_LOG4CXX = _IMP_symmetry.IMP_BASE_HAS_LOG4CXX
182 IMP_COMPILER_HAS_AUTO = _IMP_symmetry.IMP_COMPILER_HAS_AUTO
183 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_symmetry.IMP_COMPILER_HAS_DEBUG_VECTOR
184 IMP_BASE_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_BASE_HAS_BOOST_RANDOM
185 IMP_BASE_HAS_GPERFTOOLS = _IMP_symmetry.IMP_BASE_HAS_GPERFTOOLS
186 IMP_BASE_HAS_TCMALLOC_HEAPCHECKER = _IMP_symmetry.IMP_BASE_HAS_TCMALLOC_HEAPCHECKER
187 IMP_BASE_HAS_TCMALLOC_HEAPPROFILER = _IMP_symmetry.IMP_BASE_HAS_TCMALLOC_HEAPPROFILER
188 IMPBASE_SHOW_WARNINGS = _IMP_symmetry.IMPBASE_SHOW_WARNINGS
190 class _DirectorObjects(object):
191 """@internal Simple class to keep references to director objects
192 to prevent premature deletion."""
195 def register(self, obj):
196 """Take a reference to a director object; will only work for
197 refcounted C++ classes"""
198 if hasattr(obj,
'get_ref_count'):
199 self._objects.append(obj)
201 """Only drop our reference and allow cleanup by Python if no other
202 Python references exist (we hold 3 references: one in self._objects,
203 one in x, and one in the argument list for getrefcount) *and* no
204 other C++ references exist (the Python object always holds one)"""
205 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
206 or x.get_ref_count() > 1]
210 def get_object_count(self):
211 """Get number of director objects (useful for testing only)"""
212 return len(self._objects)
213 _director_objects = _DirectorObjects()
215 DEFAULT_CHECK = _IMP_symmetry.DEFAULT_CHECK
216 NONE = _IMP_symmetry.NONE
217 USAGE = _IMP_symmetry.USAGE
218 USAGE_AND_INTERNAL = _IMP_symmetry.USAGE_AND_INTERNAL
221 """set_check_level(IMP::base::CheckLevel tf)"""
222 return _IMP_symmetry.set_check_level(*args)
225 """get_check_level() -> IMP::base::CheckLevel"""
226 return _IMP_symmetry.get_check_level()
227 class _ostream(_object):
228 """Proxy of C++ std::ostream class"""
229 __swig_setmethods__ = {}
230 __setattr__ =
lambda self, name, value: _swig_setattr(self, _ostream, name, value)
231 __swig_getmethods__ = {}
232 __getattr__ =
lambda self, name: _swig_getattr(self, _ostream, name)
233 def __init__(self, *args, **kwargs):
raise AttributeError(
"No constructor defined")
234 __repr__ = _swig_repr
235 def write(self, *args):
236 """write(_ostream self, char const * osa_buf)"""
237 return _IMP_symmetry._ostream_write(self, *args)
239 _ostream_swigregister = _IMP_symmetry._ostream_swigregister
240 _ostream_swigregister(_ostream)
242 IMP_COMPILER_HAS_OVERRIDE = _IMP_symmetry.IMP_COMPILER_HAS_OVERRIDE
243 IMP_COMPILER_HAS_FINAL = _IMP_symmetry.IMP_COMPILER_HAS_FINAL
244 IMP_HAS_NOEXCEPT = _IMP_symmetry.IMP_HAS_NOEXCEPT
246 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_FILESYSTEM
247 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
248 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_RANDOM
249 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_CGAL_HAS_BOOST_SYSTEM
250 IMPCGAL_SHOW_WARNINGS = _IMP_symmetry.IMPCGAL_SHOW_WARNINGS
252 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_IMP_CGAL
253 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
254 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
255 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_RANDOM
256 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_ALGEBRA_HAS_BOOST_SYSTEM
257 IMP_ALGEBRA_HAS_CGAL = _IMP_symmetry.IMP_ALGEBRA_HAS_CGAL
258 IMP_ALGEBRA_HAS_ANN = _IMP_symmetry.IMP_ALGEBRA_HAS_ANN
259 IMPALGEBRA_SHOW_WARNINGS = _IMP_symmetry.IMPALGEBRA_SHOW_WARNINGS
261 IMP_KERNEL_HAS_IMP_CGAL = _IMP_symmetry.IMP_KERNEL_HAS_IMP_CGAL
262 IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS
263 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_RANDOM
264 IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_KERNEL_HAS_BOOST_SYSTEM
265 IMP_KERNEL_HAS_CGAL = _IMP_symmetry.IMP_KERNEL_HAS_CGAL
266 IMPKERNEL_SHOW_WARNINGS = _IMP_symmetry.IMPKERNEL_SHOW_WARNINGS
268 IMP_DISPLAY_HAS_IMP_BASE = _IMP_symmetry.IMP_DISPLAY_HAS_IMP_BASE
269 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_IMP_CGAL
270 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
271 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
272 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_RANDOM
273 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_DISPLAY_HAS_BOOST_SYSTEM
274 IMP_DISPLAY_HAS_CGAL = _IMP_symmetry.IMP_DISPLAY_HAS_CGAL
275 IMPDISPLAY_SHOW_WARNINGS = _IMP_symmetry.IMPDISPLAY_SHOW_WARNINGS
277 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
278 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
279 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
280 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
281 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
282 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_symmetry.IMP_SCORE_FUNCTOR_HAS_CGAL
283 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_symmetry.IMPSCOREFUNCTOR_SHOW_WARNINGS
285 IMP_CORE_HAS_IMP_BASE = _IMP_symmetry.IMP_CORE_HAS_IMP_BASE
286 IMP_CORE_HAS_IMP_CGAL = _IMP_symmetry.IMP_CORE_HAS_IMP_CGAL
287 IMP_CORE_HAS_IMP_KERNEL = _IMP_symmetry.IMP_CORE_HAS_IMP_KERNEL
288 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_CORE_HAS_BOOST_FILESYSTEM
289 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
290 IMP_CORE_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_CORE_HAS_BOOST_RANDOM
291 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_CORE_HAS_BOOST_SYSTEM
292 IMP_CORE_HAS_CGAL = _IMP_symmetry.IMP_CORE_HAS_CGAL
293 IMPCORE_SHOW_WARNINGS = _IMP_symmetry.IMPCORE_SHOW_WARNINGS
295 IMP_SYMMETRY_HAS_IMP_BASE = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_BASE
296 IMP_SYMMETRY_HAS_IMP_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_CGAL
297 IMP_SYMMETRY_HAS_IMP_DISPLAY = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_DISPLAY
298 IMP_SYMMETRY_HAS_IMP_KERNEL = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_KERNEL
299 IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR = _IMP_symmetry.IMP_SYMMETRY_HAS_IMP_SCORE_FUNCTOR
300 IMP_SYMMETRY_HAS_BOOST_FILESYSTEM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_FILESYSTEM
301 IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_PROGRAMOPTIONS
302 IMP_SYMMETRY_HAS_BOOST_RANDOM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_RANDOM
303 IMP_SYMMETRY_HAS_BOOST_SYSTEM = _IMP_symmetry.IMP_SYMMETRY_HAS_BOOST_SYSTEM
304 IMP_SYMMETRY_HAS_CGAL = _IMP_symmetry.IMP_SYMMETRY_HAS_CGAL
305 IMPSYMMETRY_SHOW_WARNINGS = _IMP_symmetry.IMPSYMMETRY_SHOW_WARNINGS
306 _object_types.append(
"BallMover")
308 _object_types.append(
"RigidBodyMover")
311 """Proxy of C++ IMP::symmetry::BallMover class"""
312 __swig_setmethods__ = {}
314 __setattr__ =
lambda self, name, value: _swig_setattr(self, BallMover, name, value)
315 __swig_getmethods__ = {}
317 __getattr__ =
lambda self, name: _swig_getattr(self, BallMover, name)
318 def __init__(self, *args):
320 __init__(IMP::symmetry::BallMover self, Particle p, IMP::kernel::Particles ps, IMP::Float max_tr, IMP::algebra::Vector3Ds ctrs,
321 IMP::algebra::Transformation3Ds trs) -> BallMover
323 this = _IMP_symmetry.new_BallMover(*args)
324 try: self.this.append(this)
325 except: self.this = this
326 def get_version_info(self):
327 """get_version_info(BallMover self) -> VersionInfo"""
328 return _IMP_symmetry.BallMover_get_version_info(self)
330 __swig_destroy__ = _IMP_symmetry.delete_BallMover
331 __del__ =
lambda self :
None;
333 """__str__(BallMover self) -> std::string"""
334 return _IMP_symmetry.BallMover___str__(self)
337 """__repr__(BallMover self) -> std::string"""
338 return _IMP_symmetry.BallMover___repr__(self)
341 return _object_cast_to_BallMover(o)
342 get_from = staticmethod(get_from)
344 BallMover_swigregister = _IMP_symmetry.BallMover_swigregister
345 BallMover_swigregister(BallMover)
348 """Proxy of C++ IMP::symmetry::RigidBodyMover class"""
349 __swig_setmethods__ = {}
351 __setattr__ =
lambda self, name, value: _swig_setattr(self, RigidBodyMover, name, value)
352 __swig_getmethods__ = {}
354 __getattr__ =
lambda self, name: _swig_getattr(self, RigidBodyMover, name)
355 def __init__(self, *args):
357 __init__(IMP::symmetry::RigidBodyMover self, RigidBody d, IMP::kernel::Particles ps, IMP::Float max_tr, IMP::Float max_ang, IMP::algebra::Vector3Ds ctrs,
358 IMP::algebra::Transformation3Ds trs) -> RigidBodyMover
360 this = _IMP_symmetry.new_RigidBodyMover(*args)
361 try: self.this.append(this)
362 except: self.this = this
363 def get_version_info(self):
364 """get_version_info(RigidBodyMover self) -> VersionInfo"""
365 return _IMP_symmetry.RigidBodyMover_get_version_info(self)
367 __swig_destroy__ = _IMP_symmetry.delete_RigidBodyMover
368 __del__ =
lambda self :
None;
370 """__str__(RigidBodyMover self) -> std::string"""
371 return _IMP_symmetry.RigidBodyMover___str__(self)
374 """__repr__(RigidBodyMover self) -> std::string"""
375 return _IMP_symmetry.RigidBodyMover___repr__(self)
378 return _object_cast_to_RigidBodyMover(o)
379 get_from = staticmethod(get_from)
381 RigidBodyMover_swigregister = _IMP_symmetry.RigidBodyMover_swigregister
382 RigidBodyMover_swigregister(RigidBodyMover)
385 def get_module_version():
386 """get_module_version() -> std::string const"""
387 return _IMP_symmetry.get_module_version()
390 """get_example_path(std::string fname) -> std::string"""
391 return _IMP_symmetry.get_example_path(*args)
394 """get_data_path(std::string fname) -> std::string"""
395 return _IMP_symmetry.get_data_path(*args)
396 import _version_check
397 _version_check.check_version(get_module_version())
See IMP.cgal for more information.
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
See IMP.base for more information.
See IMP.score_functor for more information.
std::string get_data_path(std::string file_name)
Return the full path to installed data.
A base class for classes which perturb particles.
See IMP.kernel for more information.
std::string get_example_path(std::string file_name)
Return the path to installed example data for this module.
See IMP.core for more information.
See IMP.algebra for more information.
See IMP.display for more information.
CheckLevel get_check_level()
Get the current audit mode.