saxs/__init__.py

# This file was automatically generated by SWIG (http://www.swig.org).
# Version 2.0.11
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.





from sys import version_info
if version_info >= (2,6,0):
    def swig_import_helper():
        from os.path import dirname
        import imp
        fp = None
        try:
            fp, pathname, description = imp.find_module('_IMP_saxs', [dirname(__file__)])
        except ImportError:
            import _IMP_saxs
            return _IMP_saxs
        if fp is not None:
            try:
                _mod = imp.load_module('_IMP_saxs', fp, pathname, description)
            finally:
                fp.close()
            return _mod
    _IMP_saxs = swig_import_helper()
    del swig_import_helper
else:
    import _IMP_saxs
del version_info
try:
    _swig_property = property
except NameError:
    pass # Python < 2.2 doesn't have 'property'.
def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
    if (name == "thisown"): return self.this.own(value)
    if (name == "this"):
        if type(value).__name__ == 'SwigPyObject':
            self.__dict__[name] = value
            return
    method = class_type.__swig_setmethods__.get(name,None)
    if method: return method(self,value)
    if (not static):
        self.__dict__[name] = value
    else:
        raise AttributeError("You cannot add attributes to %s" % self)

def _swig_setattr(self,class_type,name,value):
    return _swig_setattr_nondynamic(self,class_type,name,value,0)

def _swig_getattr(self,class_type,name):
    if (name == "thisown"): return self.this.own()
    method = class_type.__swig_getmethods__.get(name,None)
    if method: return method(self)
    raise AttributeError(name)

def _swig_repr(self):
    try: strthis = "proxy of " + self.this.__repr__()
    except: strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)

try:
    _object = object
    _newclass = 1
except AttributeError:
    class _object : pass
    _newclass = 0


try:
    import weakref
    weakref_proxy = weakref.proxy
except:
    weakref_proxy = lambda x: x


class IMP_SAXS_SwigPyIterator(_object):
    """Proxy of C++ swig::IMP_SAXS_SwigPyIterator class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, IMP_SAXS_SwigPyIterator, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, IMP_SAXS_SwigPyIterator, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _IMP_saxs.delete_IMP_SAXS_SwigPyIterator
    __del__ = lambda self : None;
    def value(self):
        """value(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_value(self)

    def incr(self, n=1):
        """
        incr(IMP_SAXS_SwigPyIterator self, size_t n=1) -> IMP_SAXS_SwigPyIterator
        incr(IMP_SAXS_SwigPyIterator self) -> IMP_SAXS_SwigPyIterator
        """
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_incr(self, n)

    def decr(self, n=1):
        """
        decr(IMP_SAXS_SwigPyIterator self, size_t n=1) -> IMP_SAXS_SwigPyIterator
        decr(IMP_SAXS_SwigPyIterator self) -> IMP_SAXS_SwigPyIterator
        """
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_decr(self, n)

    def distance(self, *args):
        """distance(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> ptrdiff_t"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_distance(self, *args)

    def equal(self, *args):
        """equal(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> bool"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_equal(self, *args)

    def copy(self):
        """copy(IMP_SAXS_SwigPyIterator self) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_copy(self)

    def next(self):
        """next(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_next(self)

    def __next__(self):
        """__next__(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___next__(self)

    def previous(self):
        """previous(IMP_SAXS_SwigPyIterator self) -> PyObject *"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_previous(self)

    def advance(self, *args):
        """advance(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator_advance(self, *args)

    def __eq__(self, *args):
        """__eq__(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> bool"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___eq__(self, *args)

    def __ne__(self, *args):
        """__ne__(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> bool"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___ne__(self, *args)

    def __iadd__(self, *args):
        """__iadd__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___iadd__(self, *args)

    def __isub__(self, *args):
        """__isub__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___isub__(self, *args)

    def __add__(self, *args):
        """__add__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___add__(self, *args)

    def __sub__(self, *args):
        """
        __sub__(IMP_SAXS_SwigPyIterator self, ptrdiff_t n) -> IMP_SAXS_SwigPyIterator
        __sub__(IMP_SAXS_SwigPyIterator self, IMP_SAXS_SwigPyIterator x) -> ptrdiff_t
        """
        return _IMP_saxs.IMP_SAXS_SwigPyIterator___sub__(self, *args)

    def __iter__(self): return self
IMP_SAXS_SwigPyIterator_swigregister = _IMP_saxs.IMP_SAXS_SwigPyIterator_swigregister
IMP_SAXS_SwigPyIterator_swigregister(IMP_SAXS_SwigPyIterator)

_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]

IMP_DEBUG = _IMP_saxs.IMP_DEBUG
IMP_RELEASE = _IMP_saxs.IMP_RELEASE
IMP_SILENT = _IMP_saxs.IMP_SILENT
IMP_PROGRESS = _IMP_saxs.IMP_PROGRESS
IMP_TERSE = _IMP_saxs.IMP_TERSE
IMP_VERBOSE = _IMP_saxs.IMP_VERBOSE
IMP_MEMORY = _IMP_saxs.IMP_MEMORY
IMP_NONE = _IMP_saxs.IMP_NONE
IMP_USAGE = _IMP_saxs.IMP_USAGE
IMP_INTERNAL = _IMP_saxs.IMP_INTERNAL
IMP_BASE_HAS_LOG4CXX = _IMP_saxs.IMP_BASE_HAS_LOG4CXX
IMP_COMPILER_HAS_AUTO = _IMP_saxs.IMP_COMPILER_HAS_AUTO
IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_saxs.IMP_COMPILER_HAS_DEBUG_VECTOR
IMP_BASE_HAS_BOOST_RANDOM = _IMP_saxs.IMP_BASE_HAS_BOOST_RANDOM
IMP_BASE_HAS_GPERFTOOLS = _IMP_saxs.IMP_BASE_HAS_GPERFTOOLS
IMP_BASE_HAS_TCMALLOC_HEAPCHECKER = _IMP_saxs.IMP_BASE_HAS_TCMALLOC_HEAPCHECKER
IMP_BASE_HAS_TCMALLOC_HEAPPROFILER = _IMP_saxs.IMP_BASE_HAS_TCMALLOC_HEAPPROFILER
IMPBASE_SHOW_WARNINGS = _IMP_saxs.IMPBASE_SHOW_WARNINGS
import sys
class _DirectorObjects(object):
    """@internal Simple class to keep references to director objects
       to prevent premature deletion."""
    def __init__(self):
        self._objects = []
    def register(self, obj):
        """Take a reference to a director object; will only work for
           refcounted C++ classes"""
        if hasattr(obj, 'get_ref_count'):
            self._objects.append(obj)
    def cleanup(self):
        """Only drop our reference and allow cleanup by Python if no other
           Python references exist (we hold 3 references: one in self._objects,
           one in x, and one in the argument list for getrefcount) *and* no
           other C++ references exist (the Python object always holds one)"""
        objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
                                         or x.get_ref_count() > 1]
        
        
        self._objects = objs
    def get_object_count(self):
        """Get number of director objects (useful for testing only)"""
        return len(self._objects)
_director_objects = _DirectorObjects()

DEFAULT_CHECK = _IMP_saxs.DEFAULT_CHECK
NONE = _IMP_saxs.NONE
USAGE = _IMP_saxs.USAGE
USAGE_AND_INTERNAL = _IMP_saxs.USAGE_AND_INTERNAL

def set_check_level(*args):
  """set_check_level(IMP::base::CheckLevel tf)"""
  return _IMP_saxs.set_check_level(*args)

def get_check_level():
  """get_check_level() -> IMP::base::CheckLevel"""
  return _IMP_saxs.get_check_level()
class _ostream(_object):
    """Proxy of C++ std::ostream class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, _ostream, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, _ostream, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
    __repr__ = _swig_repr
    def write(self, *args):
        """write(_ostream self, char const * osa_buf)"""
        return _IMP_saxs._ostream_write(self, *args)

_ostream_swigregister = _IMP_saxs._ostream_swigregister
_ostream_swigregister(_ostream)

IMP_COMPILER_HAS_OVERRIDE = _IMP_saxs.IMP_COMPILER_HAS_OVERRIDE
IMP_COMPILER_HAS_FINAL = _IMP_saxs.IMP_COMPILER_HAS_FINAL
IMP_HAS_NOEXCEPT = _IMP_saxs.IMP_HAS_NOEXCEPT
import IMP.base
IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_CGAL_HAS_BOOST_FILESYSTEM
IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
IMP_CGAL_HAS_BOOST_RANDOM = _IMP_saxs.IMP_CGAL_HAS_BOOST_RANDOM
IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_CGAL_HAS_BOOST_SYSTEM
IMPCGAL_SHOW_WARNINGS = _IMP_saxs.IMPCGAL_SHOW_WARNINGS
import IMP.cgal
IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_saxs.IMP_ALGEBRA_HAS_IMP_CGAL
IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_RANDOM
IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_ALGEBRA_HAS_BOOST_SYSTEM
IMP_ALGEBRA_HAS_CGAL = _IMP_saxs.IMP_ALGEBRA_HAS_CGAL
IMP_ALGEBRA_HAS_ANN = _IMP_saxs.IMP_ALGEBRA_HAS_ANN
IMPALGEBRA_SHOW_WARNINGS = _IMP_saxs.IMPALGEBRA_SHOW_WARNINGS
import IMP.algebra
IMP_KERNEL_HAS_IMP_CGAL = _IMP_saxs.IMP_KERNEL_HAS_IMP_CGAL
IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS
IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_saxs.IMP_KERNEL_HAS_BOOST_RANDOM
IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_KERNEL_HAS_BOOST_SYSTEM
IMP_KERNEL_HAS_CGAL = _IMP_saxs.IMP_KERNEL_HAS_CGAL
IMPKERNEL_SHOW_WARNINGS = _IMP_saxs.IMPKERNEL_SHOW_WARNINGS
import IMP.kernel
IMP_DISPLAY_HAS_IMP_BASE = _IMP_saxs.IMP_DISPLAY_HAS_IMP_BASE
IMP_DISPLAY_HAS_IMP_CGAL = _IMP_saxs.IMP_DISPLAY_HAS_IMP_CGAL
IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_RANDOM
IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_DISPLAY_HAS_BOOST_SYSTEM
IMP_DISPLAY_HAS_CGAL = _IMP_saxs.IMP_DISPLAY_HAS_CGAL
IMPDISPLAY_SHOW_WARNINGS = _IMP_saxs.IMPDISPLAY_SHOW_WARNINGS
import IMP.display
IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_saxs.IMP_SCORE_FUNCTOR_HAS_CGAL
IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_saxs.IMPSCOREFUNCTOR_SHOW_WARNINGS
import IMP.score_functor
IMP_CORE_HAS_IMP_BASE = _IMP_saxs.IMP_CORE_HAS_IMP_BASE
IMP_CORE_HAS_IMP_CGAL = _IMP_saxs.IMP_CORE_HAS_IMP_CGAL
IMP_CORE_HAS_IMP_KERNEL = _IMP_saxs.IMP_CORE_HAS_IMP_KERNEL
IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_CORE_HAS_BOOST_FILESYSTEM
IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
IMP_CORE_HAS_BOOST_RANDOM = _IMP_saxs.IMP_CORE_HAS_BOOST_RANDOM
IMP_CORE_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_CORE_HAS_BOOST_SYSTEM
IMP_CORE_HAS_CGAL = _IMP_saxs.IMP_CORE_HAS_CGAL
IMPCORE_SHOW_WARNINGS = _IMP_saxs.IMPCORE_SHOW_WARNINGS
import IMP.core
IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_saxs.IMP_CONTAINER_HAS_IMP_ALGEBRA
IMP_CONTAINER_HAS_IMP_BASE = _IMP_saxs.IMP_CONTAINER_HAS_IMP_BASE
IMP_CONTAINER_HAS_IMP_CGAL = _IMP_saxs.IMP_CONTAINER_HAS_IMP_CGAL
IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_saxs.IMP_CONTAINER_HAS_IMP_DISPLAY
IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_saxs.IMP_CONTAINER_HAS_IMP_KERNEL
IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_saxs.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_RANDOM
IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_CONTAINER_HAS_BOOST_SYSTEM
IMP_CONTAINER_HAS_CGAL = _IMP_saxs.IMP_CONTAINER_HAS_CGAL
IMPCONTAINER_SHOW_WARNINGS = _IMP_saxs.IMPCONTAINER_SHOW_WARNINGS
import IMP.container
IMP_ATOM_HAS_IMP_BASE = _IMP_saxs.IMP_ATOM_HAS_IMP_BASE
IMP_ATOM_HAS_IMP_CGAL = _IMP_saxs.IMP_ATOM_HAS_IMP_CGAL
IMP_ATOM_HAS_IMP_KERNEL = _IMP_saxs.IMP_ATOM_HAS_IMP_KERNEL
IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_saxs.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
IMP_ATOM_HAS_BOOST_RANDOM = _IMP_saxs.IMP_ATOM_HAS_BOOST_RANDOM
IMP_ATOM_HAS_BOOST_REGEX = _IMP_saxs.IMP_ATOM_HAS_BOOST_REGEX
IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_ATOM_HAS_BOOST_SYSTEM
IMP_ATOM_HAS_CGAL = _IMP_saxs.IMP_ATOM_HAS_CGAL
IMPATOM_SHOW_WARNINGS = _IMP_saxs.IMPATOM_SHOW_WARNINGS
IMP_ATOM_TYPE_INDEX = _IMP_saxs.IMP_ATOM_TYPE_INDEX
IMP_RESIDUE_TYPE_INDEX = _IMP_saxs.IMP_RESIDUE_TYPE_INDEX
IMP_HIERARCHY_TYPE_INDEX = _IMP_saxs.IMP_HIERARCHY_TYPE_INDEX
import IMP.atom
IMP_SAXS_HAS_IMP_BASE = _IMP_saxs.IMP_SAXS_HAS_IMP_BASE
IMP_SAXS_HAS_IMP_CGAL = _IMP_saxs.IMP_SAXS_HAS_IMP_CGAL
IMP_SAXS_HAS_IMP_CONTAINER = _IMP_saxs.IMP_SAXS_HAS_IMP_CONTAINER
IMP_SAXS_HAS_IMP_DISPLAY = _IMP_saxs.IMP_SAXS_HAS_IMP_DISPLAY
IMP_SAXS_HAS_IMP_KERNEL = _IMP_saxs.IMP_SAXS_HAS_IMP_KERNEL
IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_saxs.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_saxs.IMP_SAXS_HAS_BOOST_FILESYSTEM
IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_saxs.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
IMP_SAXS_HAS_BOOST_RANDOM = _IMP_saxs.IMP_SAXS_HAS_BOOST_RANDOM
IMP_SAXS_HAS_BOOST_REGEX = _IMP_saxs.IMP_SAXS_HAS_BOOST_REGEX
IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_saxs.IMP_SAXS_HAS_BOOST_SYSTEM
IMP_SAXS_HAS_CGAL = _IMP_saxs.IMP_SAXS_HAS_CGAL
IMPSAXS_SHOW_WARNINGS = _IMP_saxs.IMPSAXS_SHOW_WARNINGS
class DistBase(_object):
    """Proxy of C++ std::vector<(double)> class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, DistBase, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, DistBase, name)
    __repr__ = _swig_repr
    def iterator(self):
        """iterator(DistBase self) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs.DistBase_iterator(self)

    def __iter__(self): return self.iterator()
    def __nonzero__(self):
        """__nonzero__(DistBase self) -> bool"""
        return _IMP_saxs.DistBase___nonzero__(self)

    def __bool__(self):
        """__bool__(DistBase self) -> bool"""
        return _IMP_saxs.DistBase___bool__(self)

    def __len__(self):
        """__len__(DistBase self) -> std::vector< double >::size_type"""
        return _IMP_saxs.DistBase___len__(self)

    def pop(self):
        """pop(DistBase self) -> std::vector< double >::value_type"""
        return _IMP_saxs.DistBase_pop(self)

    def __getslice__(self, *args):
        """__getslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j) -> DistBase"""
        return _IMP_saxs.DistBase___getslice__(self, *args)

    def __setslice__(self, *args):
        """
        __setslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j, 
            DistBase v=std::vector< double,std::allocator< double > >())
        __setslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j)
        """
        return _IMP_saxs.DistBase___setslice__(self, *args)

    def __delslice__(self, *args):
        """__delslice__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::difference_type j)"""
        return _IMP_saxs.DistBase___delslice__(self, *args)

    def __delitem__(self, *args):
        """
        __delitem__(DistBase self, std::vector< double >::difference_type i)
        __delitem__(DistBase self, PySliceObject * slice)
        """
        return _IMP_saxs.DistBase___delitem__(self, *args)

    def __getitem__(self, *args):
        """
        __getitem__(DistBase self, PySliceObject * slice) -> DistBase
        __getitem__(DistBase self, std::vector< double >::difference_type i) -> std::vector< double >::value_type const &
        """
        return _IMP_saxs.DistBase___getitem__(self, *args)

    def __setitem__(self, *args):
        """
        __setitem__(DistBase self, PySliceObject * slice, DistBase v)
        __setitem__(DistBase self, PySliceObject * slice)
        __setitem__(DistBase self, std::vector< double >::difference_type i, std::vector< double >::value_type const & x)
        """
        return _IMP_saxs.DistBase___setitem__(self, *args)

    def append(self, *args):
        """append(DistBase self, std::vector< double >::value_type const & x)"""
        return _IMP_saxs.DistBase_append(self, *args)

    def empty(self):
        """empty(DistBase self) -> bool"""
        return _IMP_saxs.DistBase_empty(self)

    def size(self):
        """size(DistBase self) -> std::vector< double >::size_type"""
        return _IMP_saxs.DistBase_size(self)

    def clear(self):
        """clear(DistBase self)"""
        return _IMP_saxs.DistBase_clear(self)

    def swap(self, *args):
        """swap(DistBase self, DistBase v)"""
        return _IMP_saxs.DistBase_swap(self, *args)

    def get_allocator(self):
        """get_allocator(DistBase self) -> std::vector< double >::allocator_type"""
        return _IMP_saxs.DistBase_get_allocator(self)

    def begin(self):
        """begin(DistBase self) -> std::vector< double >::iterator"""
        return _IMP_saxs.DistBase_begin(self)

    def end(self):
        """end(DistBase self) -> std::vector< double >::iterator"""
        return _IMP_saxs.DistBase_end(self)

    def rbegin(self):
        """rbegin(DistBase self) -> std::vector< double >::reverse_iterator"""
        return _IMP_saxs.DistBase_rbegin(self)

    def rend(self):
        """rend(DistBase self) -> std::vector< double >::reverse_iterator"""
        return _IMP_saxs.DistBase_rend(self)

    def pop_back(self):
        """pop_back(DistBase self)"""
        return _IMP_saxs.DistBase_pop_back(self)

    def erase(self, *args):
        """
        erase(DistBase self, std::vector< double >::iterator pos) -> std::vector< double >::iterator
        erase(DistBase self, std::vector< double >::iterator first, std::vector< double >::iterator last) -> std::vector< double >::iterator
        """
        return _IMP_saxs.DistBase_erase(self, *args)

    def __init__(self, *args): 
        """
        __init__(std::vector<(double)> self) -> DistBase
        __init__(std::vector<(double)> self, DistBase arg2) -> DistBase
        __init__(std::vector<(double)> self, std::vector< double >::size_type size) -> DistBase
        __init__(std::vector<(double)> self, std::vector< double >::size_type size, std::vector< double >::value_type const & value) -> DistBase
        """
        this = _IMP_saxs.new_DistBase(*args)
        try: self.this.append(this)
        except: self.this = this
    def push_back(self, *args):
        """push_back(DistBase self, std::vector< double >::value_type const & x)"""
        return _IMP_saxs.DistBase_push_back(self, *args)

    def front(self):
        """front(DistBase self) -> std::vector< double >::value_type const &"""
        return _IMP_saxs.DistBase_front(self)

    def back(self):
        """back(DistBase self) -> std::vector< double >::value_type const &"""
        return _IMP_saxs.DistBase_back(self)

    def assign(self, *args):
        """assign(DistBase self, std::vector< double >::size_type n, std::vector< double >::value_type const & x)"""
        return _IMP_saxs.DistBase_assign(self, *args)

    def resize(self, *args):
        """
        resize(DistBase self, std::vector< double >::size_type new_size)
        resize(DistBase self, std::vector< double >::size_type new_size, std::vector< double >::value_type const & x)
        """
        return _IMP_saxs.DistBase_resize(self, *args)

    def insert(self, *args):
        """
        insert(DistBase self, std::vector< double >::iterator pos, std::vector< double >::value_type const & x) -> std::vector< double >::iterator
        insert(DistBase self, std::vector< double >::iterator pos, std::vector< double >::size_type n, std::vector< double >::value_type const & x)
        """
        return _IMP_saxs.DistBase_insert(self, *args)

    def reserve(self, *args):
        """reserve(DistBase self, std::vector< double >::size_type n)"""
        return _IMP_saxs.DistBase_reserve(self, *args)

    def capacity(self):
        """capacity(DistBase self) -> std::vector< double >::size_type"""
        return _IMP_saxs.DistBase_capacity(self)

    __swig_destroy__ = _IMP_saxs.delete_DistBase
    __del__ = lambda self : None;
DistBase_swigregister = _IMP_saxs.DistBase_swigregister
DistBase_swigregister(DistBase)

class _Vector3Ds(_object):
    """Proxy of C++ std::vector<(::IMP::algebra::Vector3D)> class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, _Vector3Ds, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, _Vector3Ds, name)
    __repr__ = _swig_repr
    def iterator(self):
        """iterator(_Vector3Ds self) -> IMP_SAXS_SwigPyIterator"""
        return _IMP_saxs._Vector3Ds_iterator(self)

    def __iter__(self): return self.iterator()
    def __nonzero__(self):
        """__nonzero__(_Vector3Ds self) -> bool"""
        return _IMP_saxs._Vector3Ds___nonzero__(self)

    def __bool__(self):
        """__bool__(_Vector3Ds self) -> bool"""
        return _IMP_saxs._Vector3Ds___bool__(self)

    def __len__(self):
        """__len__(_Vector3Ds self) -> std::vector< IMP::algebra::VectorD< 3 > >::size_type"""
        return _IMP_saxs._Vector3Ds___len__(self)

    def pop(self):
        """pop(_Vector3Ds self) -> Vector3D"""
        return _IMP_saxs._Vector3Ds_pop(self)

    def __getslice__(self, *args):
        """__getslice__(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::difference_type i, std::vector< IMP::algebra::VectorD< 3 > >::difference_type j) -> _Vector3Ds"""
        return _IMP_saxs._Vector3Ds___getslice__(self, *args)

    def __setslice__(self, *args):
        """
        __setslice__(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::difference_type i, std::vector< IMP::algebra::VectorD< 3 > >::difference_type j, 
            _Vector3Ds v=std::vector< IMP::algebra::VectorD< 3 >,std::allocator< IMP::algebra::VectorD< 3 > > >())
        __setslice__(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::difference_type i, std::vector< IMP::algebra::VectorD< 3 > >::difference_type j)
        """
        return _IMP_saxs._Vector3Ds___setslice__(self, *args)

    def __delslice__(self, *args):
        """__delslice__(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::difference_type i, std::vector< IMP::algebra::VectorD< 3 > >::difference_type j)"""
        return _IMP_saxs._Vector3Ds___delslice__(self, *args)

    def __delitem__(self, *args):
        """
        __delitem__(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::difference_type i)
        __delitem__(_Vector3Ds self, PySliceObject * slice)
        """
        return _IMP_saxs._Vector3Ds___delitem__(self, *args)

    def __getitem__(self, *args):
        """
        __getitem__(_Vector3Ds self, PySliceObject * slice) -> _Vector3Ds
        __getitem__(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::difference_type i) -> Vector3D
        """
        return _IMP_saxs._Vector3Ds___getitem__(self, *args)

    def __setitem__(self, *args):
        """
        __setitem__(_Vector3Ds self, PySliceObject * slice, _Vector3Ds v)
        __setitem__(_Vector3Ds self, PySliceObject * slice)
        __setitem__(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::difference_type i, Vector3D x)
        """
        return _IMP_saxs._Vector3Ds___setitem__(self, *args)

    def append(self, *args):
        """append(_Vector3Ds self, Vector3D x)"""
        return _IMP_saxs._Vector3Ds_append(self, *args)

    def empty(self):
        """empty(_Vector3Ds self) -> bool"""
        return _IMP_saxs._Vector3Ds_empty(self)

    def size(self):
        """size(_Vector3Ds self) -> std::vector< IMP::algebra::VectorD< 3 > >::size_type"""
        return _IMP_saxs._Vector3Ds_size(self)

    def clear(self):
        """clear(_Vector3Ds self)"""
        return _IMP_saxs._Vector3Ds_clear(self)

    def swap(self, *args):
        """swap(_Vector3Ds self, _Vector3Ds v)"""
        return _IMP_saxs._Vector3Ds_swap(self, *args)

    def get_allocator(self):
        """get_allocator(_Vector3Ds self) -> std::vector< IMP::algebra::VectorD< 3 > >::allocator_type"""
        return _IMP_saxs._Vector3Ds_get_allocator(self)

    def begin(self):
        """begin(_Vector3Ds self) -> std::vector< IMP::algebra::VectorD< 3 > >::iterator"""
        return _IMP_saxs._Vector3Ds_begin(self)

    def end(self):
        """end(_Vector3Ds self) -> std::vector< IMP::algebra::VectorD< 3 > >::iterator"""
        return _IMP_saxs._Vector3Ds_end(self)

    def rbegin(self):
        """rbegin(_Vector3Ds self) -> std::vector< IMP::algebra::VectorD< 3 > >::reverse_iterator"""
        return _IMP_saxs._Vector3Ds_rbegin(self)

    def rend(self):
        """rend(_Vector3Ds self) -> std::vector< IMP::algebra::VectorD< 3 > >::reverse_iterator"""
        return _IMP_saxs._Vector3Ds_rend(self)

    def pop_back(self):
        """pop_back(_Vector3Ds self)"""
        return _IMP_saxs._Vector3Ds_pop_back(self)

    def erase(self, *args):
        """
        erase(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::iterator pos) -> std::vector< IMP::algebra::VectorD< 3 > >::iterator
        erase(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::iterator first, std::vector< IMP::algebra::VectorD< 3 > >::iterator last) -> std::vector< IMP::algebra::VectorD< 3 > >::iterator
        """
        return _IMP_saxs._Vector3Ds_erase(self, *args)

    def __init__(self, *args): 
        """
        __init__(std::vector<(::IMP::algebra::Vector3D)> self) -> _Vector3Ds
        __init__(std::vector<(::IMP::algebra::Vector3D)> self, _Vector3Ds arg2) -> _Vector3Ds
        __init__(std::vector<(::IMP::algebra::Vector3D)> self, std::vector< IMP::algebra::VectorD< 3 > >::size_type size) -> _Vector3Ds
        __init__(std::vector<(::IMP::algebra::Vector3D)> self, std::vector< IMP::algebra::VectorD< 3 > >::size_type size, Vector3D value) -> _Vector3Ds
        """
        this = _IMP_saxs.new__Vector3Ds(*args)
        try: self.this.append(this)
        except: self.this = this
    def push_back(self, *args):
        """push_back(_Vector3Ds self, Vector3D x)"""
        return _IMP_saxs._Vector3Ds_push_back(self, *args)

    def front(self):
        """front(_Vector3Ds self) -> Vector3D"""
        return _IMP_saxs._Vector3Ds_front(self)

    def back(self):
        """back(_Vector3Ds self) -> Vector3D"""
        return _IMP_saxs._Vector3Ds_back(self)

    def assign(self, *args):
        """assign(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::size_type n, Vector3D x)"""
        return _IMP_saxs._Vector3Ds_assign(self, *args)

    def resize(self, *args):
        """
        resize(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::size_type new_size)
        resize(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::size_type new_size, Vector3D x)
        """
        return _IMP_saxs._Vector3Ds_resize(self, *args)

    def insert(self, *args):
        """
        insert(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::iterator pos, Vector3D x) -> std::vector< IMP::algebra::VectorD< 3 > >::iterator
        insert(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::iterator pos, std::vector< IMP::algebra::VectorD< 3 > >::size_type n, 
            Vector3D x)
        """
        return _IMP_saxs._Vector3Ds_insert(self, *args)

    def reserve(self, *args):
        """reserve(_Vector3Ds self, std::vector< IMP::algebra::VectorD< 3 > >::size_type n)"""
        return _IMP_saxs._Vector3Ds_reserve(self, *args)

    def capacity(self):
        """capacity(_Vector3Ds self) -> std::vector< IMP::algebra::VectorD< 3 > >::size_type"""
        return _IMP_saxs._Vector3Ds_capacity(self)

    __swig_destroy__ = _IMP_saxs.delete__Vector3Ds
    __del__ = lambda self : None;
_Vector3Ds_swigregister = _IMP_saxs._Vector3Ds_swigregister
_Vector3Ds_swigregister(_Vector3Ds)

_object_types.append("Profile")


def _object_cast_to_Profile(*args):
  """_object_cast_to_Profile(Object o) -> Profile"""
  return _IMP_saxs._object_cast_to_Profile(*args)
ALL_ATOMS = _IMP_saxs.ALL_ATOMS
HEAVY_ATOMS = _IMP_saxs.HEAVY_ATOMS
CA_ATOMS = _IMP_saxs.CA_ATOMS
class FormFactorTable(_object):
    """Proxy of C++ IMP::saxs::FormFactorTable class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, FormFactorTable, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, FormFactorTable, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::FormFactorTable self) -> FormFactorTable
        __init__(IMP::saxs::FormFactorTable self, IMP::String const & table_name, IMP::Float min_q, IMP::Float max_q, IMP::Float delta_q) -> FormFactorTable
        """
        this = _IMP_saxs.new_FormFactorTable(*args)
        try: self.this.append(this)
        except: self.this = this
    def get_form_factor(self, *args):
        """
        get_form_factor(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> IMP::Float
        get_form_factor(FormFactorTable self, Particle p) -> IMP::Float
        """
        return _IMP_saxs.FormFactorTable_get_form_factor(self, *args)

    def get_vacuum_form_factor(self, *args):
        """
        get_vacuum_form_factor(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> IMP::Float
        get_vacuum_form_factor(FormFactorTable self, Particle p) -> IMP::Float
        """
        return _IMP_saxs.FormFactorTable_get_vacuum_form_factor(self, *args)

    def get_dummy_form_factor(self, *args):
        """
        get_dummy_form_factor(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> IMP::Float
        get_dummy_form_factor(FormFactorTable self, Particle p) -> IMP::Float
        """
        return _IMP_saxs.FormFactorTable_get_dummy_form_factor(self, *args)

    def get_water_form_factor(self):
        """get_water_form_factor(FormFactorTable self) -> IMP::Float"""
        return _IMP_saxs.FormFactorTable_get_water_form_factor(self)

    def get_vacuum_water_form_factor(self):
        """get_vacuum_water_form_factor(FormFactorTable self) -> IMP::Float"""
        return _IMP_saxs.FormFactorTable_get_vacuum_water_form_factor(self)

    def get_dummy_water_form_factor(self):
        """get_dummy_water_form_factor(FormFactorTable self) -> IMP::Float"""
        return _IMP_saxs.FormFactorTable_get_dummy_water_form_factor(self)

    def get_form_factors(self, *args):
        """
        get_form_factors(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> IMP::Floats const
        get_form_factors(FormFactorTable self, Particle p) -> IMP::Floats const &
        """
        return _IMP_saxs.FormFactorTable_get_form_factors(self, *args)

    def get_vacuum_form_factors(self, *args):
        """
        get_vacuum_form_factors(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> IMP::Floats const
        get_vacuum_form_factors(FormFactorTable self, Particle p) -> IMP::Floats const &
        """
        return _IMP_saxs.FormFactorTable_get_vacuum_form_factors(self, *args)

    def get_dummy_form_factors(self, *args):
        """
        get_dummy_form_factors(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> IMP::Floats const
        get_dummy_form_factors(FormFactorTable self, Particle p) -> IMP::Floats const &
        """
        return _IMP_saxs.FormFactorTable_get_dummy_form_factors(self, *args)

    def get_water_form_factors(self):
        """get_water_form_factors(FormFactorTable self) -> IMP::Floats const &"""
        return _IMP_saxs.FormFactorTable_get_water_form_factors(self)

    def get_water_vacuum_form_factors(self):
        """get_water_vacuum_form_factors(FormFactorTable self) -> IMP::Floats const &"""
        return _IMP_saxs.FormFactorTable_get_water_vacuum_form_factors(self)

    def get_water_dummy_form_factors(self):
        """get_water_dummy_form_factors(FormFactorTable self) -> IMP::Floats const &"""
        return _IMP_saxs.FormFactorTable_get_water_dummy_form_factors(self)

    def get_radius(self, *args):
        """
        get_radius(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> IMP::Float
        get_radius(FormFactorTable self, Particle p) -> IMP::Float
        """
        return _IMP_saxs.FormFactorTable_get_radius(self, *args)

    def get_volume(self, *args):
        """
        get_volume(FormFactorTable self, Particle p, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> IMP::Float
        get_volume(FormFactorTable self, Particle p) -> IMP::Float
        """
        return _IMP_saxs.FormFactorTable_get_volume(self, *args)

    def show(self, *args):
        """
        show(FormFactorTable self, _ostream out=std::cout, std::string prefix="")
        show(FormFactorTable self, _ostream out=std::cout)
        show(FormFactorTable self)
        """
        return _IMP_saxs.FormFactorTable_show(self, *args)

    __swig_setmethods__["rho_"] = _IMP_saxs.FormFactorTable_rho__set
    __swig_getmethods__["rho_"] = _IMP_saxs.FormFactorTable_rho__get
    if _newclass:rho_ = _swig_property(_IMP_saxs.FormFactorTable_rho__get, _IMP_saxs.FormFactorTable_rho__set)
    __swig_destroy__ = _IMP_saxs.delete_FormFactorTable
    __del__ = lambda self : None;
FormFactorTable_swigregister = _IMP_saxs.FormFactorTable_swigregister
FormFactorTable_swigregister(FormFactorTable)
cvar = _IMP_saxs.cvar


def default_form_factor_table():
  """default_form_factor_table() -> FormFactorTable"""
  return _IMP_saxs.default_form_factor_table()
class Profile(IMP.base.Object):
    """Proxy of C++ IMP::saxs::Profile class"""
    __swig_setmethods__ = {}
    for _s in [IMP.base.Object]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, Profile, name, value)
    __swig_getmethods__ = {}
    for _s in [IMP.base.Object]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, Profile, name)
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::Profile self, IMP::String const & file_name, bool fit_file=False) -> Profile
        __init__(IMP::saxs::Profile self, IMP::String const & file_name) -> Profile
        __init__(IMP::saxs::Profile self, IMP::Float qmin=0.0, IMP::Float qmax=0.5, IMP::Float delta=0.005) -> Profile
        __init__(IMP::saxs::Profile self, IMP::Float qmin=0.0, IMP::Float qmax=0.5) -> Profile
        __init__(IMP::saxs::Profile self, IMP::Float qmin=0.0) -> Profile
        __init__(IMP::saxs::Profile self) -> Profile
        """
        this = _IMP_saxs.new_Profile(*args)
        try: self.this.append(this)
        except: self.this = this
    def get_version_info(self):
        """get_version_info(Profile self) -> VersionInfo"""
        return _IMP_saxs.Profile_get_version_info(self)

    __swig_destroy__ = _IMP_saxs.delete_Profile
    __del__ = lambda self : None;
    def calculate_profile_partial(self, *args):
        """
        calculate_profile_partial(Profile self, IMP::kernel::Particles const & particles, IMP::Floats const & surface=IMP::Floats(), 
            IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS)
        calculate_profile_partial(Profile self, IMP::kernel::Particles const & particles, IMP::Floats const & surface=IMP::Floats())
        calculate_profile_partial(Profile self, IMP::kernel::Particles const & particles)
        calculate_profile_partial(Profile self, IMP::kernel::Particles const & particles1, IMP::kernel::Particles const & particles2, 
            IMP::Floats const & surface1=IMP::Floats(), IMP::Floats const & surface2=IMP::Floats(), 
            IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS)
        calculate_profile_partial(Profile self, IMP::kernel::Particles const & particles1, IMP::kernel::Particles const & particles2, 
            IMP::Floats const & surface1=IMP::Floats(), IMP::Floats const & surface2=IMP::Floats())
        calculate_profile_partial(Profile self, IMP::kernel::Particles const & particles1, IMP::kernel::Particles const & particles2, 
            IMP::Floats const & surface1=IMP::Floats())
        calculate_profile_partial(Profile self, IMP::kernel::Particles const & particles1, IMP::kernel::Particles const & particles2)
        """
        return _IMP_saxs.Profile_calculate_profile_partial(self, *args)

    def calculate_profile_reciprocal_partial(self, *args):
        """
        calculate_profile_reciprocal_partial(Profile self, IMP::kernel::Particles const & particles, IMP::Floats const & surface=IMP::Floats(), 
            IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS)
        calculate_profile_reciprocal_partial(Profile self, IMP::kernel::Particles const & particles, IMP::Floats const & surface=IMP::Floats())
        calculate_profile_reciprocal_partial(Profile self, IMP::kernel::Particles const & particles)
        """
        return _IMP_saxs.Profile_calculate_profile_reciprocal_partial(self, *args)

    def calculate_profile(self, *args):
        """
        calculate_profile(Profile self, IMP::kernel::Particles const & particles, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS, 
            bool reciprocal=False, bool variance=False, double variance_tau=0.1)
        calculate_profile(Profile self, IMP::kernel::Particles const & particles, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS, 
            bool reciprocal=False, bool variance=False)
        calculate_profile(Profile self, IMP::kernel::Particles const & particles, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS, 
            bool reciprocal=False)
        calculate_profile(Profile self, IMP::kernel::Particles const & particles, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS)
        calculate_profile(Profile self, IMP::kernel::Particles const & particles)
        calculate_profile(Profile self, IMP::kernel::Particles const & particles1, IMP::kernel::Particles const & particles2, 
            IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS, bool variance=False, double variance_tau=0.1)
        calculate_profile(Profile self, IMP::kernel::Particles const & particles1, IMP::kernel::Particles const & particles2, 
            IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS, bool variance=False)
        calculate_profile(Profile self, IMP::kernel::Particles const & particles1, IMP::kernel::Particles const & particles2, 
            IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS)
        calculate_profile(Profile self, IMP::kernel::Particles const & particles1, IMP::kernel::Particles const & particles2)
        """
        return _IMP_saxs.Profile_calculate_profile(self, *args)

    def calculate_I0(self, *args):
        """
        calculate_I0(Profile self, IMP::kernel::Particles const & particles, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> IMP::Float
        calculate_I0(Profile self, IMP::kernel::Particles const & particles) -> IMP::Float
        """
        return _IMP_saxs.Profile_calculate_I0(self, *args)

    def calculate_profile_constant_form_factor(self, *args):
        """
        calculate_profile_constant_form_factor(Profile self, IMP::kernel::Particles const & particles, IMP::Float form_factor=1.0)
        calculate_profile_constant_form_factor(Profile self, IMP::kernel::Particles const & particles)
        """
        return _IMP_saxs.Profile_calculate_profile_constant_form_factor(self, *args)

    def calculate_profile_symmetric(self, *args):
        """
        calculate_profile_symmetric(Profile self, IMP::kernel::Particles const & particles, unsigned int n, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS)
        calculate_profile_symmetric(Profile self, IMP::kernel::Particles const & particles, unsigned int n)
        """
        return _IMP_saxs.Profile_calculate_profile_symmetric(self, *args)

    def profile_2_distribution(self, *args):
        """profile_2_distribution(Profile self, RadialDistributionFunction rd, IMP::Float max_distance)"""
        return _IMP_saxs.Profile_profile_2_distribution(self, *args)

    def distribution_2_profile(self, *args):
        """distribution_2_profile(Profile self, RadialDistributionFunction r_dist)"""
        return _IMP_saxs.Profile_distribution_2_profile(self, *args)

    def resample(self, *args):
        """
        resample(Profile self, Profile exp_profile, Profile resampled_profile, bool partial_profiles=False)
        resample(Profile self, Profile exp_profile, Profile resampled_profile)
        """
        return _IMP_saxs.Profile_resample(self, *args)

    def downsample(self, *args):
        """downsample(Profile self, Profile downsampled_profile, unsigned int point_number)"""
        return _IMP_saxs.Profile_downsample(self, *args)

    def radius_of_gyration(self, end_q_rg=1.3):
        """
        radius_of_gyration(Profile self, double end_q_rg=1.3) -> double
        radius_of_gyration(Profile self) -> double
        """
        return _IMP_saxs.Profile_radius_of_gyration(self, end_q_rg)

    def read_SAXS_file(self, *args):
        """
        read_SAXS_file(Profile self, IMP::String const & file_name, bool fit_file=False)
        read_SAXS_file(Profile self, IMP::String const & file_name)
        """
        return _IMP_saxs.Profile_read_SAXS_file(self, *args)

    def write_SAXS_file(self, *args):
        """
        write_SAXS_file(Profile self, IMP::String const & file_name, IMP::Float max_q=0.0)
        write_SAXS_file(Profile self, IMP::String const & file_name)
        """
        return _IMP_saxs.Profile_write_SAXS_file(self, *args)

    def read_partial_profiles(self, *args):
        """read_partial_profiles(Profile self, IMP::String const & file_name)"""
        return _IMP_saxs.Profile_read_partial_profiles(self, *args)

    def write_partial_profiles(self, *args):
        """write_partial_profiles(Profile self, IMP::String const & file_name)"""
        return _IMP_saxs.Profile_write_partial_profiles(self, *args)

    def get_delta_q(self):
        """get_delta_q(Profile self) -> IMP::Float"""
        return _IMP_saxs.Profile_get_delta_q(self)

    def get_min_q(self):
        """get_min_q(Profile self) -> IMP::Float"""
        return _IMP_saxs.Profile_get_min_q(self)

    def get_max_q(self):
        """get_max_q(Profile self) -> IMP::Float"""
        return _IMP_saxs.Profile_get_max_q(self)

    def get_intensity(self, *args):
        """get_intensity(Profile self, unsigned int i) -> IMP::Float"""
        return _IMP_saxs.Profile_get_intensity(self, *args)

    def get_q(self, *args):
        """get_q(Profile self, unsigned int i) -> IMP::Float"""
        return _IMP_saxs.Profile_get_q(self, *args)

    def get_error(self, *args):
        """get_error(Profile self, unsigned int i) -> IMP::Float"""
        return _IMP_saxs.Profile_get_error(self, *args)

    def get_weight(self, *args):
        """get_weight(Profile self, unsigned int i) -> IMP::Float"""
        return _IMP_saxs.Profile_get_weight(self, *args)

    def get_variance(self, *args):
        """get_variance(Profile self, unsigned int i, unsigned int j) -> IMP::Float"""
        return _IMP_saxs.Profile_get_variance(self, *args)

    def get_average_radius(self):
        """get_average_radius(Profile self) -> IMP::Float"""
        return _IMP_saxs.Profile_get_average_radius(self)

    def size(self):
        """size(Profile self) -> unsigned int"""
        return _IMP_saxs.Profile_size(self)

    def is_uniform_sampling(self):
        """is_uniform_sampling(Profile self) -> bool"""
        return _IMP_saxs.Profile_is_uniform_sampling(self)

    def get_name(self):
        """get_name(Profile self) -> std::string"""
        return _IMP_saxs.Profile_get_name(self)

    def get_id(self):
        """get_id(Profile self) -> unsigned int"""
        return _IMP_saxs.Profile_get_id(self)

    def set_intensity(self, *args):
        """set_intensity(Profile self, unsigned int i, IMP::Float iq)"""
        return _IMP_saxs.Profile_set_intensity(self, *args)

    def set_ff_table(self, *args):
        """set_ff_table(Profile self, FormFactorTable ff_table)"""
        return _IMP_saxs.Profile_set_ff_table(self, *args)

    def set_average_radius(self, *args):
        """set_average_radius(Profile self, IMP::Float r)"""
        return _IMP_saxs.Profile_set_average_radius(self, *args)

    def set_average_volume(self, *args):
        """set_average_volume(Profile self, IMP::Float v)"""
        return _IMP_saxs.Profile_set_average_volume(self, *args)

    def set_name(self, *args):
        """set_name(Profile self, std::string name)"""
        return _IMP_saxs.Profile_set_name(self, *args)

    def set_id(self, *args):
        """set_id(Profile self, unsigned int id)"""
        return _IMP_saxs.Profile_set_id(self, *args)

    def add_entry(self, *args):
        """
        add_entry(Profile self, IMP::Float q, IMP::Float intensity, IMP::Float error=1.0)
        add_entry(Profile self, IMP::Float q, IMP::Float intensity)
        """
        return _IMP_saxs.Profile_add_entry(self, *args)

    def add_errors(self):
        """add_errors(Profile self)"""
        return _IMP_saxs.Profile_add_errors(self)

    def add_noise(self, percentage=0.03):
        """
        add_noise(Profile self, IMP::Float percentage=0.03)
        add_noise(Profile self)
        """
        return _IMP_saxs.Profile_add_noise(self, percentage)

    def sum_partial_profiles(self, *args):
        """sum_partial_profiles(Profile self, IMP::Float c1, IMP::Float c2)"""
        return _IMP_saxs.Profile_sum_partial_profiles(self, *args)

    def add(self, *args):
        """
        add(Profile self, Profile other_profile, IMP::Float weight=1.0)
        add(Profile self, Profile other_profile)
        add(Profile self, std::vector< IMP::saxs::Profile *,std::allocator< IMP::saxs::Profile * > > const & profiles, 
            DistBase weights=std::vector< IMP::Float >())
        add(Profile self, std::vector< IMP::saxs::Profile *,std::allocator< IMP::saxs::Profile * > > const & profiles)
        """
        return _IMP_saxs.Profile_add(self, *args)

    def add_partial_profiles(self, *args):
        """
        add_partial_profiles(Profile self, Profile other_profile, IMP::Float weight=1.0)
        add_partial_profiles(Profile self, Profile other_profile)
        add_partial_profiles(Profile self, std::vector< IMP::saxs::Profile *,std::allocator< IMP::saxs::Profile * > > const & profiles, 
            DistBase weights=std::vector< IMP::Float >())
        add_partial_profiles(Profile self, std::vector< IMP::saxs::Profile *,std::allocator< IMP::saxs::Profile * > > const & profiles)
        """
        return _IMP_saxs.Profile_add_partial_profiles(self, *args)

    def background_adjust(self, *args):
        """background_adjust(Profile self, double start_q)"""
        return _IMP_saxs.Profile_background_adjust(self, *args)

    def scale(self, *args):
        """scale(Profile self, IMP::Float c)"""
        return _IMP_saxs.Profile_scale(self, *args)

    def offset(self, *args):
        """offset(Profile self, IMP::Float c)"""
        return _IMP_saxs.Profile_offset(self, *args)

    def copy_errors(self, *args):
        """copy_errors(Profile self, Profile exp_profile)"""
        return _IMP_saxs.Profile_copy_errors(self, *args)

    def __str__(self):
        """__str__(Profile self) -> std::string"""
        return _IMP_saxs.Profile___str__(self)

    def __repr__(self):
        """__repr__(Profile self) -> std::string"""
        return _IMP_saxs.Profile___repr__(self)

    def get_from(o):
       return _object_cast_to_Profile(o)
    get_from = staticmethod(get_from)

Profile_swigregister = _IMP_saxs.Profile_swigregister
Profile_swigregister(Profile)
Profile.modulation_function_parameter_ = _IMP_saxs.cvar.Profile_modulation_function_parameter_

class FitParameters(_object):
    """Proxy of C++ IMP::saxs::FitParameters class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, FitParameters, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, FitParameters, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::FitParameters self) -> FitParameters
        __init__(IMP::saxs::FitParameters self, float chi, float c1, float c2, float c, float o) -> FitParameters
        __init__(IMP::saxs::FitParameters self, float chi, float c1, float c2) -> FitParameters
        """
        this = _IMP_saxs.new_FitParameters(*args)
        try: self.this.append(this)
        except: self.this = this
    def get_chi(self):
        """get_chi(FitParameters self) -> float"""
        return _IMP_saxs.FitParameters_get_chi(self)

    def get_c1(self):
        """get_c1(FitParameters self) -> float"""
        return _IMP_saxs.FitParameters_get_c1(self)

    def get_c2(self):
        """get_c2(FitParameters self) -> float"""
        return _IMP_saxs.FitParameters_get_c2(self)

    def get_scale(self):
        """get_scale(FitParameters self) -> float"""
        return _IMP_saxs.FitParameters_get_scale(self)

    def get_offset(self):
        """get_offset(FitParameters self) -> float"""
        return _IMP_saxs.FitParameters_get_offset(self)

    def get_default_chi(self):
        """get_default_chi(FitParameters self) -> float"""
        return _IMP_saxs.FitParameters_get_default_chi(self)

    def get_pdb_file_name(self):
        """get_pdb_file_name(FitParameters self) -> std::string"""
        return _IMP_saxs.FitParameters_get_pdb_file_name(self)

    def get_profile_file_name(self):
        """get_profile_file_name(FitParameters self) -> std::string"""
        return _IMP_saxs.FitParameters_get_profile_file_name(self)

    def get_mol_index(self):
        """get_mol_index(FitParameters self) -> int"""
        return _IMP_saxs.FitParameters_get_mol_index(self)

    def set_chi(self, *args):
        """set_chi(FitParameters self, float chi)"""
        return _IMP_saxs.FitParameters_set_chi(self, *args)

    def set_default_chi(self, *args):
        """set_default_chi(FitParameters self, float chi)"""
        return _IMP_saxs.FitParameters_set_default_chi(self, *args)

    def set_profile_file_name(self, *args):
        """set_profile_file_name(FitParameters self, std::string file_name)"""
        return _IMP_saxs.FitParameters_set_profile_file_name(self, *args)

    def set_pdb_file_name(self, *args):
        """set_pdb_file_name(FitParameters self, std::string file_name)"""
        return _IMP_saxs.FitParameters_set_pdb_file_name(self, *args)

    def set_mol_index(self, *args):
        """set_mol_index(FitParameters self, int index)"""
        return _IMP_saxs.FitParameters_set_mol_index(self, *args)

    def show(self, *args):
        """show(FitParameters self, _ostream s)"""
        return _IMP_saxs.FitParameters_show(self, *args)

    __swig_destroy__ = _IMP_saxs.delete_FitParameters
    __del__ = lambda self : None;
FitParameters_swigregister = _IMP_saxs.FitParameters_swigregister
FitParameters_swigregister(FitParameters)

class WeightedFitParameters(FitParameters):
    """Proxy of C++ IMP::saxs::WeightedFitParameters class"""
    __swig_setmethods__ = {}
    for _s in [FitParameters]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, WeightedFitParameters, name, value)
    __swig_getmethods__ = {}
    for _s in [FitParameters]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, WeightedFitParameters, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """__init__(IMP::saxs::WeightedFitParameters self, float chi, float c1, float c2, IMP::Floats weights) -> WeightedFitParameters"""
        this = _IMP_saxs.new_WeightedFitParameters(*args)
        try: self.this.append(this)
        except: self.this = this
    def get_weights(self):
        """get_weights(WeightedFitParameters self) -> IMP::Floats const &"""
        return _IMP_saxs.WeightedFitParameters_get_weights(self)

    def show(self, *args):
        """show(WeightedFitParameters self, _ostream s)"""
        return _IMP_saxs.WeightedFitParameters_show(self, *args)

    __swig_destroy__ = _IMP_saxs.delete_WeightedFitParameters
    __del__ = lambda self : None;
WeightedFitParameters_swigregister = _IMP_saxs.WeightedFitParameters_swigregister
WeightedFitParameters_swigregister(WeightedFitParameters)

class ChiScore(_object):
    """Proxy of C++ IMP::saxs::ChiScore class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, ChiScore, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, ChiScore, name)
    __repr__ = _swig_repr
    def compute_score(self, *args):
        """
        compute_score(ChiScore self, Profile exp_profile, Profile model_profile, bool use_offset=False) -> IMP::Float
        compute_score(ChiScore self, Profile exp_profile, Profile model_profile) -> IMP::Float
        compute_score(ChiScore self, Profile exp_profile, Profile model_profile, IMP::Float min_q, IMP::Float max_q) -> IMP::Float
        """
        return _IMP_saxs.ChiScore_compute_score(self, *args)

    def compute_scale_factor(self, *args):
        """
        compute_scale_factor(ChiScore self, Profile exp_profile, Profile model_profile, IMP::Float offset=0.0) -> IMP::Float
        compute_scale_factor(ChiScore self, Profile exp_profile, Profile model_profile) -> IMP::Float
        """
        return _IMP_saxs.ChiScore_compute_scale_factor(self, *args)

    def compute_offset(self, *args):
        """compute_offset(ChiScore self, Profile exp_profile, Profile model_profile) -> IMP::Float"""
        return _IMP_saxs.ChiScore_compute_offset(self, *args)

    def __init__(self): 
        """__init__(IMP::saxs::ChiScore self) -> ChiScore"""
        this = _IMP_saxs.new_ChiScore()
        try: self.this.append(this)
        except: self.this = this
    __swig_destroy__ = _IMP_saxs.delete_ChiScore
    __del__ = lambda self : None;
ChiScore_swigregister = _IMP_saxs.ChiScore_swigregister
ChiScore_swigregister(ChiScore)

class ChiScoreLog(_object):
    """Proxy of C++ IMP::saxs::ChiScoreLog class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, ChiScoreLog, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, ChiScoreLog, name)
    __repr__ = _swig_repr
    def compute_score(self, *args):
        """
        compute_score(ChiScoreLog self, Profile exp_profile, Profile model_profile, bool use_offset=False) -> IMP::Float
        compute_score(ChiScoreLog self, Profile exp_profile, Profile model_profile) -> IMP::Float
        compute_score(ChiScoreLog self, Profile exp_profile, Profile model_profile, IMP::Float min_q, IMP::Float max_q) -> IMP::Float
        """
        return _IMP_saxs.ChiScoreLog_compute_score(self, *args)

    def compute_scale_factor(self, *args):
        """
        compute_scale_factor(ChiScoreLog self, Profile exp_profile, Profile model_profile, IMP::Float offset=0.0) -> IMP::Float
        compute_scale_factor(ChiScoreLog self, Profile exp_profile, Profile model_profile) -> IMP::Float
        """
        return _IMP_saxs.ChiScoreLog_compute_scale_factor(self, *args)

    def compute_offset(self, *args):
        """compute_offset(ChiScoreLog self, Profile exp_profile, Profile model_profile) -> IMP::Float"""
        return _IMP_saxs.ChiScoreLog_compute_offset(self, *args)

    def __init__(self): 
        """__init__(IMP::saxs::ChiScoreLog self) -> ChiScoreLog"""
        this = _IMP_saxs.new_ChiScoreLog()
        try: self.this.append(this)
        except: self.this = this
    __swig_destroy__ = _IMP_saxs.delete_ChiScoreLog
    __del__ = lambda self : None;
ChiScoreLog_swigregister = _IMP_saxs.ChiScoreLog_swigregister
ChiScoreLog_swigregister(ChiScoreLog)

class ProfileFitterChi(IMP.base.Object):
    """Proxy of C++ IMP::saxs::ProfileFitter<(IMP::saxs::ChiScore)> class"""
    __swig_setmethods__ = {}
    for _s in [IMP.base.Object]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, ProfileFitterChi, name, value)
    __swig_getmethods__ = {}
    for _s in [IMP.base.Object]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, ProfileFitterChi, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScore)> self, Profile exp_profile) -> ProfileFitterChi
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScore)> self, Profile exp_profile, ChiScore sf) -> ProfileFitterChi
        """
        this = _IMP_saxs.new_ProfileFitterChi(*args)
        try: self.this.append(this)
        except: self.this = this
    def compute_score(self, *args):
        """
        compute_score(ProfileFitterChi self, Profile model_profile, bool use_offset=False, std::string const fit_file_name="") -> IMP::Float
        compute_score(ProfileFitterChi self, Profile model_profile, bool use_offset=False) -> IMP::Float
        compute_score(ProfileFitterChi self, Profile model_profile) -> IMP::Float
        compute_score(ProfileFitterChi self, Profile model_profile, IMP::Float min_q, IMP::Float max_q) -> IMP::Float
        """
        return _IMP_saxs.ProfileFitterChi_compute_score(self, *args)

    def fit_profile(self, *args):
        """
        fit_profile(ProfileFitterChi self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0, 
            float max_c2=4.0, bool use_offset=False, std::string const fit_file_name="") -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0, 
            float max_c2=4.0, bool use_offset=False) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0, 
            float max_c2=4.0) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile, float min_c1=0.95) -> FitParameters
        fit_profile(ProfileFitterChi self, Profile partial_profile) -> FitParameters
        """
        return _IMP_saxs.ProfileFitterChi_fit_profile(self, *args)

    def compute_scale_factor(self, *args):
        """
        compute_scale_factor(ProfileFitterChi self, Profile model_profile, IMP::Float offset=0.0) -> IMP::Float
        compute_scale_factor(ProfileFitterChi self, Profile model_profile) -> IMP::Float
        """
        return _IMP_saxs.ProfileFitterChi_compute_scale_factor(self, *args)

    def compute_offset(self, *args):
        """compute_offset(ProfileFitterChi self, Profile model_profile) -> IMP::Float"""
        return _IMP_saxs.ProfileFitterChi_compute_offset(self, *args)

    def resample(self, *args):
        """resample(ProfileFitterChi self, Profile model_profile, Profile resampled_profile)"""
        return _IMP_saxs.ProfileFitterChi_resample(self, *args)

    def write_SAXS_fit_file(self, *args):
        """
        write_SAXS_fit_file(ProfileFitterChi self, std::string const & file_name, Profile model_profile, IMP::Float const chi_square, 
            IMP::Float const c=1, IMP::Float const offset=0)
        write_SAXS_fit_file(ProfileFitterChi self, std::string const & file_name, Profile model_profile, IMP::Float const chi_square, 
            IMP::Float const c=1)
        write_SAXS_fit_file(ProfileFitterChi self, std::string const & file_name, Profile model_profile, IMP::Float const chi_square)
        """
        return _IMP_saxs.ProfileFitterChi_write_SAXS_fit_file(self, *args)

    __swig_destroy__ = _IMP_saxs.delete_ProfileFitterChi
    __del__ = lambda self : None;
ProfileFitterChi_swigregister = _IMP_saxs.ProfileFitterChi_swigregister
ProfileFitterChi_swigregister(ProfileFitterChi)

class WeightedProfileFitter(ProfileFitterChi):
    """Proxy of C++ IMP::saxs::WeightedProfileFitter class"""
    __swig_setmethods__ = {}
    for _s in [ProfileFitterChi]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, WeightedProfileFitter, name, value)
    __swig_getmethods__ = {}
    for _s in [ProfileFitterChi]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, WeightedProfileFitter, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """__init__(IMP::saxs::WeightedProfileFitter self, Profile exp_profile) -> WeightedProfileFitter"""
        this = _IMP_saxs.new_WeightedProfileFitter(*args)
        try: self.this.append(this)
        except: self.this = this
    def compute_score(self, *args):
        """
        compute_score(WeightedProfileFitter self, IMP::saxs::ProfilesTemp const & profiles, DistBase weights=) -> IMP::Float
        compute_score(WeightedProfileFitter self, IMP::saxs::ProfilesTemp const & profiles) -> IMP::Float
        """
        return _IMP_saxs.WeightedProfileFitter_compute_score(self, *args)

    def fit_profile(self, *args):
        """
        fit_profile(WeightedProfileFitter self, IMP::saxs::ProfilesTemp partial_profiles, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0, 
            float max_c2=4.0, std::string const fit_file_name="") -> WeightedFitParameters
        fit_profile(WeightedProfileFitter self, IMP::saxs::ProfilesTemp partial_profiles, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0, 
            float max_c2=4.0) -> WeightedFitParameters
        fit_profile(WeightedProfileFitter self, IMP::saxs::ProfilesTemp partial_profiles, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0) -> WeightedFitParameters
        fit_profile(WeightedProfileFitter self, IMP::saxs::ProfilesTemp partial_profiles, float min_c1=0.95, float max_c1=1.05) -> WeightedFitParameters
        fit_profile(WeightedProfileFitter self, IMP::saxs::ProfilesTemp partial_profiles, float min_c1=0.95) -> WeightedFitParameters
        fit_profile(WeightedProfileFitter self, IMP::saxs::ProfilesTemp partial_profiles) -> WeightedFitParameters
        """
        return _IMP_saxs.WeightedProfileFitter_fit_profile(self, *args)

    def write_fit_file(self, *args):
        """write_fit_file(WeightedProfileFitter self, IMP::saxs::ProfilesTemp partial_profiles, WeightedFitParameters fp, std::string const fit_file_name)"""
        return _IMP_saxs.WeightedProfileFitter_write_fit_file(self, *args)

    __swig_destroy__ = _IMP_saxs.delete_WeightedProfileFitter
    __del__ = lambda self : None;
WeightedProfileFitter_swigregister = _IMP_saxs.WeightedProfileFitter_swigregister
WeightedProfileFitter_swigregister(WeightedProfileFitter)

class DerivativeCalculator(IMP.base.Object):
    """Proxy of C++ IMP::saxs::DerivativeCalculator class"""
    __swig_setmethods__ = {}
    for _s in [IMP.base.Object]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, DerivativeCalculator, name, value)
    __swig_getmethods__ = {}
    for _s in [IMP.base.Object]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, DerivativeCalculator, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """__init__(IMP::saxs::DerivativeCalculator self, Profile exp_profile) -> DerivativeCalculator"""
        this = _IMP_saxs.new_DerivativeCalculator(*args)
        try: self.this.append(this)
        except: self.this = this
    def compute_gaussian_effect_size(self, *args):
        """
        compute_gaussian_effect_size(DerivativeCalculator self, Profile model_profile, ProfileFitterChi pf, bool use_offset=False) -> DistBase
        compute_gaussian_effect_size(DerivativeCalculator self, Profile model_profile, ProfileFitterChi pf) -> DistBase
        """
        return _IMP_saxs.DerivativeCalculator_compute_gaussian_effect_size(self, *args)

    def compute_all_derivatives(self, *args):
        """
        compute_all_derivatives(DerivativeCalculator self, IMP::kernel::Particles const & particles, std::vector< IMP::kernel::Particles,std::allocator< IMP::kernel::Particles > > const & rigid_bodies, 
            std::vector< IMP::core::RigidBody,std::allocator< IMP::core::RigidBody > > const & rigid_bodies_decorators, 
            Profile model_profile, 
            DistBase effect_size, DerivativeAccumulator acc)
        """
        return _IMP_saxs.DerivativeCalculator_compute_all_derivatives(self, *args)

    __swig_destroy__ = _IMP_saxs.delete_DerivativeCalculator
    __del__ = lambda self : None;
DerivativeCalculator_swigregister = _IMP_saxs.DerivativeCalculator_swigregister
DerivativeCalculator_swigregister(DerivativeCalculator)

class Restraint(IMP.kernel.Restraint):
    """Proxy of C++ IMP::saxs::Restraint class"""
    __swig_setmethods__ = {}
    for _s in [IMP.kernel.Restraint]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, Restraint, name, value)
    __swig_getmethods__ = {}
    for _s in [IMP.kernel.Restraint]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, Restraint, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::Restraint self, IMP::kernel::Particles const & particles, Profile exp_profile, IMP::saxs::FormFactorType ff_type=HEAVY_ATOMS) -> Restraint
        __init__(IMP::saxs::Restraint self, IMP::kernel::Particles const & particles, Profile exp_profile) -> Restraint
        """
        this = _IMP_saxs.new_Restraint(*args)
        try: self.this.append(this)
        except: self.this = this
        if self.__class__ != Restraint:
            import IMP.base
            IMP.base._director_objects.register(self)



    def do_get_inputs(self):
        """do_get_inputs(Restraint self) -> IMP::kernel::ModelObjectsTemp"""
        return _IMP_saxs.Restraint_do_get_inputs(self)

    def get_version_info(self):
        """get_version_info(Restraint self) -> VersionInfo"""
        return _IMP_saxs.Restraint_get_version_info(self)

    __swig_destroy__ = _IMP_saxs.delete_Restraint
    __del__ = lambda self : None;
Restraint_swigregister = _IMP_saxs.Restraint_swigregister
Restraint_swigregister(Restraint)

class RadiusOfGyrationRestraint(IMP.kernel.Restraint):
    """Proxy of C++ IMP::saxs::RadiusOfGyrationRestraint class"""
    __swig_setmethods__ = {}
    for _s in [IMP.kernel.Restraint]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, RadiusOfGyrationRestraint, name, value)
    __swig_getmethods__ = {}
    for _s in [IMP.kernel.Restraint]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, RadiusOfGyrationRestraint, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::RadiusOfGyrationRestraint self, IMP::kernel::Particles const & particles, Profile exp_profile, double const end_q_rg=1.3) -> RadiusOfGyrationRestraint
        __init__(IMP::saxs::RadiusOfGyrationRestraint self, IMP::kernel::Particles const & particles, Profile exp_profile) -> RadiusOfGyrationRestraint
        """
        this = _IMP_saxs.new_RadiusOfGyrationRestraint(*args)
        try: self.this.append(this)
        except: self.this = this
    def do_get_inputs(self):
        """do_get_inputs(RadiusOfGyrationRestraint self) -> IMP::kernel::ModelObjectsTemp"""
        return _IMP_saxs.RadiusOfGyrationRestraint_do_get_inputs(self)

    def get_version_info(self):
        """get_version_info(RadiusOfGyrationRestraint self) -> VersionInfo"""
        return _IMP_saxs.RadiusOfGyrationRestraint_get_version_info(self)

    __swig_destroy__ = _IMP_saxs.delete_RadiusOfGyrationRestraint
    __del__ = lambda self : None;
RadiusOfGyrationRestraint_swigregister = _IMP_saxs.RadiusOfGyrationRestraint_swigregister
RadiusOfGyrationRestraint_swigregister(RadiusOfGyrationRestraint)

class FloatDistribution(DistBase):
    """Proxy of C++ IMP::saxs::Distribution<(IMP::Float)> class"""
    __swig_setmethods__ = {}
    for _s in [DistBase]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, FloatDistribution, name, value)
    __swig_getmethods__ = {}
    for _s in [DistBase]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, FloatDistribution, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::Distribution<(IMP::Float)> self, IMP::Float bin_size=pr_resolution) -> FloatDistribution
        __init__(IMP::saxs::Distribution<(IMP::Float)> self) -> FloatDistribution
        """
        this = _IMP_saxs.new_FloatDistribution(*args)
        try: self.this.append(this)
        except: self.this = this
    def get_max_distance(self):
        """get_max_distance(FloatDistribution self) -> IMP::Float"""
        return _IMP_saxs.FloatDistribution_get_max_distance(self)

    def get_bin_size(self):
        """get_bin_size(FloatDistribution self) -> IMP::Float"""
        return _IMP_saxs.FloatDistribution_get_bin_size(self)

    __swig_destroy__ = _IMP_saxs.delete_FloatDistribution
    __del__ = lambda self : None;
FloatDistribution_swigregister = _IMP_saxs.FloatDistribution_swigregister
FloatDistribution_swigregister(FloatDistribution)

class VectorDistribution(_Vector3Ds):
    """Proxy of C++ IMP::saxs::Distribution<(IMP::algebra::Vector3D)> class"""
    __swig_setmethods__ = {}
    for _s in [_Vector3Ds]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, VectorDistribution, name, value)
    __swig_getmethods__ = {}
    for _s in [_Vector3Ds]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, VectorDistribution, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::Distribution<(IMP::algebra::Vector3D)> self, IMP::Float bin_size=pr_resolution) -> VectorDistribution
        __init__(IMP::saxs::Distribution<(IMP::algebra::Vector3D)> self) -> VectorDistribution
        """
        this = _IMP_saxs.new_VectorDistribution(*args)
        try: self.this.append(this)
        except: self.this = this
    def get_max_distance(self):
        """get_max_distance(VectorDistribution self) -> IMP::Float"""
        return _IMP_saxs.VectorDistribution_get_max_distance(self)

    def get_bin_size(self):
        """get_bin_size(VectorDistribution self) -> IMP::Float"""
        return _IMP_saxs.VectorDistribution_get_bin_size(self)

    __swig_destroy__ = _IMP_saxs.delete_VectorDistribution
    __del__ = lambda self : None;
VectorDistribution_swigregister = _IMP_saxs.VectorDistribution_swigregister
VectorDistribution_swigregister(VectorDistribution)

class RadialDistributionFunction(FloatDistribution):
    """Proxy of C++ IMP::saxs::RadialDistributionFunction class"""
    __swig_setmethods__ = {}
    for _s in [FloatDistribution]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, RadialDistributionFunction, name, value)
    __swig_getmethods__ = {}
    for _s in [FloatDistribution]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, RadialDistributionFunction, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::RadialDistributionFunction self, IMP::Float bin_size=pr_resolution) -> RadialDistributionFunction
        __init__(IMP::saxs::RadialDistributionFunction self) -> RadialDistributionFunction
        __init__(IMP::saxs::RadialDistributionFunction self, std::string const & file_name) -> RadialDistributionFunction
        """
        this = _IMP_saxs.new_RadialDistributionFunction(*args)
        try: self.this.append(this)
        except: self.this = this
    def scale(self, *args):
        """scale(RadialDistributionFunction self, IMP::Float c)"""
        return _IMP_saxs.RadialDistributionFunction_scale(self, *args)

    def add(self, *args):
        """add(RadialDistributionFunction self, RadialDistributionFunction model_pr)"""
        return _IMP_saxs.RadialDistributionFunction_add(self, *args)

    def show(self, *args):
        """
        show(RadialDistributionFunction self, _ostream out=std::cout)
        show(RadialDistributionFunction self)
        """
        return _IMP_saxs.RadialDistributionFunction_show(self, *args)

    def R_factor_score(self, *args):
        """
        R_factor_score(RadialDistributionFunction self, RadialDistributionFunction model_pr, std::string const & file_name="") -> IMP::Float
        R_factor_score(RadialDistributionFunction self, RadialDistributionFunction model_pr) -> IMP::Float
        """
        return _IMP_saxs.RadialDistributionFunction_R_factor_score(self, *args)

    def fit(self, *args):
        """
        fit(RadialDistributionFunction self, RadialDistributionFunction model_pr, std::string const & file_name="") -> IMP::Float
        fit(RadialDistributionFunction self, RadialDistributionFunction model_pr) -> IMP::Float
        """
        return _IMP_saxs.RadialDistributionFunction_fit(self, *args)

    def normalize(self):
        """normalize(RadialDistributionFunction self)"""
        return _IMP_saxs.RadialDistributionFunction_normalize(self)

    __swig_destroy__ = _IMP_saxs.delete_RadialDistributionFunction
    __del__ = lambda self : None;
RadialDistributionFunction_swigregister = _IMP_saxs.RadialDistributionFunction_swigregister
RadialDistributionFunction_swigregister(RadialDistributionFunction)

class DeltaDistributionFunction(VectorDistribution):
    """Proxy of C++ IMP::saxs::DeltaDistributionFunction class"""
    __swig_setmethods__ = {}
    for _s in [VectorDistribution]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, DeltaDistributionFunction, name, value)
    __swig_getmethods__ = {}
    for _s in [VectorDistribution]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, DeltaDistributionFunction, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::DeltaDistributionFunction self, IMP::kernel::Particles const & particles, IMP::Float max_distance=0.0, IMP::Float bin_size=pr_resolution) -> DeltaDistributionFunction
        __init__(IMP::saxs::DeltaDistributionFunction self, IMP::kernel::Particles const & particles, IMP::Float max_distance=0.0) -> DeltaDistributionFunction
        __init__(IMP::saxs::DeltaDistributionFunction self, IMP::kernel::Particles const & particles) -> DeltaDistributionFunction
        """
        this = _IMP_saxs.new_DeltaDistributionFunction(*args)
        try: self.this.append(this)
        except: self.this = this
    def calculate_derivative_distribution(self, *args):
        """calculate_derivative_distribution(DeltaDistributionFunction self, Particle particle)"""
        return _IMP_saxs.DeltaDistributionFunction_calculate_derivative_distribution(self, *args)

    def show(self, *args):
        """
        show(DeltaDistributionFunction self, _ostream out=std::cout, std::string prefix="")
        show(DeltaDistributionFunction self, _ostream out=std::cout)
        show(DeltaDistributionFunction self)
        """
        return _IMP_saxs.DeltaDistributionFunction_show(self, *args)

    __swig_destroy__ = _IMP_saxs.delete_DeltaDistributionFunction
    __del__ = lambda self : None;
DeltaDistributionFunction_swigregister = _IMP_saxs.DeltaDistributionFunction_swigregister
DeltaDistributionFunction_swigregister(DeltaDistributionFunction)

class SolventAccessibleSurface(_object):
    """Proxy of C++ IMP::saxs::SolventAccessibleSurface class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, SolventAccessibleSurface, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, SolventAccessibleSurface, name)
    __repr__ = _swig_repr
    def get_solvent_accessibility(self, *args):
        """
        get_solvent_accessibility(SolventAccessibleSurface self, IMP::core::XYZRs const & points, float probe_radius=1.8, float density=5.0) -> IMP::Floats
        get_solvent_accessibility(SolventAccessibleSurface self, IMP::core::XYZRs const & points, float probe_radius=1.8) -> IMP::Floats
        get_solvent_accessibility(SolventAccessibleSurface self, IMP::core::XYZRs const & points) -> IMP::Floats
        """
        return _IMP_saxs.SolventAccessibleSurface_get_solvent_accessibility(self, *args)

    def __init__(self): 
        """__init__(IMP::saxs::SolventAccessibleSurface self) -> SolventAccessibleSurface"""
        this = _IMP_saxs.new_SolventAccessibleSurface()
        try: self.this.append(this)
        except: self.this = this
    __swig_destroy__ = _IMP_saxs.delete_SolventAccessibleSurface
    __del__ = lambda self : None;
SolventAccessibleSurface_swigregister = _IMP_saxs.SolventAccessibleSurface_swigregister
SolventAccessibleSurface_swigregister(SolventAccessibleSurface)

class ProfileFitterChiLog(IMP.base.Object):
    """Proxy of C++ IMP::saxs::ProfileFitter<(IMP::saxs::ChiScoreLog)> class"""
    __swig_setmethods__ = {}
    for _s in [IMP.base.Object]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
    __setattr__ = lambda self, name, value: _swig_setattr(self, ProfileFitterChiLog, name, value)
    __swig_getmethods__ = {}
    for _s in [IMP.base.Object]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
    __getattr__ = lambda self, name: _swig_getattr(self, ProfileFitterChiLog, name)
    __repr__ = _swig_repr
    def __init__(self, *args): 
        """
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScoreLog)> self, Profile exp_profile) -> ProfileFitterChiLog
        __init__(IMP::saxs::ProfileFitter<(IMP::saxs::ChiScoreLog)> self, Profile exp_profile, ChiScoreLog sf) -> ProfileFitterChiLog
        """
        this = _IMP_saxs.new_ProfileFitterChiLog(*args)
        try: self.this.append(this)
        except: self.this = this
    def compute_score(self, *args):
        """
        compute_score(ProfileFitterChiLog self, Profile model_profile, bool use_offset=False, std::string const fit_file_name="") -> IMP::Float
        compute_score(ProfileFitterChiLog self, Profile model_profile, bool use_offset=False) -> IMP::Float
        compute_score(ProfileFitterChiLog self, Profile model_profile) -> IMP::Float
        compute_score(ProfileFitterChiLog self, Profile model_profile, IMP::Float min_q, IMP::Float max_q) -> IMP::Float
        """
        return _IMP_saxs.ProfileFitterChiLog_compute_score(self, *args)

    def fit_profile(self, *args):
        """
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0, 
            float max_c2=4.0, bool use_offset=False, std::string const fit_file_name="") -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0, 
            float max_c2=4.0, bool use_offset=False) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0, 
            float max_c2=4.0) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05, float min_c2=-2.0) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, float min_c1=0.95, float max_c1=1.05) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile, float min_c1=0.95) -> FitParameters
        fit_profile(ProfileFitterChiLog self, Profile partial_profile) -> FitParameters
        """
        return _IMP_saxs.ProfileFitterChiLog_fit_profile(self, *args)

    def compute_scale_factor(self, *args):
        """
        compute_scale_factor(ProfileFitterChiLog self, Profile model_profile, IMP::Float offset=0.0) -> IMP::Float
        compute_scale_factor(ProfileFitterChiLog self, Profile model_profile) -> IMP::Float
        """
        return _IMP_saxs.ProfileFitterChiLog_compute_scale_factor(self, *args)

    def compute_offset(self, *args):
        """compute_offset(ProfileFitterChiLog self, Profile model_profile) -> IMP::Float"""
        return _IMP_saxs.ProfileFitterChiLog_compute_offset(self, *args)

    def resample(self, *args):
        """resample(ProfileFitterChiLog self, Profile model_profile, Profile resampled_profile)"""
        return _IMP_saxs.ProfileFitterChiLog_resample(self, *args)

    def write_SAXS_fit_file(self, *args):
        """
        write_SAXS_fit_file(ProfileFitterChiLog self, std::string const & file_name, Profile model_profile, IMP::Float const chi_square, 
            IMP::Float const c=1, IMP::Float const offset=0)
        write_SAXS_fit_file(ProfileFitterChiLog self, std::string const & file_name, Profile model_profile, IMP::Float const chi_square, 
            IMP::Float const c=1)
        write_SAXS_fit_file(ProfileFitterChiLog self, std::string const & file_name, Profile model_profile, IMP::Float const chi_square)
        """
        return _IMP_saxs.ProfileFitterChiLog_write_SAXS_fit_file(self, *args)

    __swig_destroy__ = _IMP_saxs.delete_ProfileFitterChiLog
    __del__ = lambda self : None;
ProfileFitterChiLog_swigregister = _IMP_saxs.ProfileFitterChiLog_swigregister
ProfileFitterChiLog_swigregister(ProfileFitterChiLog)


def get_module_version():
  """get_module_version() -> std::string const"""
  return _IMP_saxs.get_module_version()

def get_example_path(*args):
  """get_example_path(std::string fname) -> std::string"""
  return _IMP_saxs.get_example_path(*args)

def get_data_path(*args):
  """get_data_path(std::string fname) -> std::string"""
  return _IMP_saxs.get_data_path(*args)
import _version_check
_version_check.check_version(get_module_version())

# This file is compatible with both classic and new-style classes.