doc/html/model__interaction_8h_source.html

 /**

  *  \file model_interaction.h

  *  \brief operations implying interaction of models and the EM module

  *

  *  Copyright 2007-2013 IMP Inventors. All rights reserved.

 */


 #ifndef IMPEM2D_MODEL_INTERACTION_H

 #define IMPEM2D_MODEL_INTERACTION_H


 #include "IMP/em2d/em2d_config.h"

 #include "IMP/em/DensityMap.h"

 #include "IMP/em/SampledDensityMap.h"

 #include "IMP/em/MapReaderWriter.h"

 #include "IMP/algebra/Vector2D.h"

 #include "IMP/algebra/Vector3D.h"

 #include "IMP/atom/pdb.h"

 #include "IMP/atom/Hierarchy.h"

 #include "IMP/atom/Chain.h"

 #include "IMP/atom/Residue.h"

 #include "IMP/atom/Atom.h"

 #include "IMP/core/XYZ.h"

 #include "IMP/core.h"

 #include "IMP/base/Pointer.h"

 #include "IMP.h"

 #include <typeinfo>


 IMPEM2D_BEGIN_NAMESPACE


 //! Generate a PDB file from a set of Vector2D (all the points are C-alpha) and

 //! the Z coordinate is set to 0.

 /*!

   \note This version deals with the problem of having more than 10000 points

 */

 IMPEM2DEXPORT void write_vectors_as_pdb(

                   const algebra::Vector2Ds vs, const String filename);


 IMPEM2DEXPORT void write_vectors_as_pdb(

                   const algebra::Vector3Ds vs, const String filename);


 IMPEM2D_END_NAMESPACE


 #endif /* IMPEM2D_MODEL_INTERACTION_H */

pdb.h
Functions to read pdbs.

Pointer.h
A nullptr-initialized pointer to an IMP Object.

Vector2D.h
Simple 2D vector class.

Atom.h
Simple atom decorator.

IMP::algebra::Vector2Ds
base::Vector< VectorD< 2 > > Vector2Ds
Definition: VectorD.h:585

XYZ.h
Simple xyz decorator.

DensityMap.h
Class for handling density maps.

Hierarchy.h
Decorator for helping deal with a hierarchy of molecules.

IMP::algebra::Vector3Ds
base::Vector< VectorD< 3 > > Vector3Ds
Definition: VectorD.h:589

IMP::em2d::write_vectors_as_pdb
void write_vectors_as_pdb(const algebra::Vector2Ds vs, const String filename)

MapReaderWriter.h
An abstract class for reading a map.

Residue.h
A decorator for Residues.

Chain.h
Store the chain ID.

Vector3D.h
Simple 3D vector class.

SampledDensityMap.h
Sampled density map.

IMP::String
std::string String
Basic string value.
Definition: base/types.h:44