IMP  2.1.0
The Integrative Modeling Platform
gsl/__init__.py
1 # This file was automatically generated by SWIG (http://www.swig.org).
2 # Version 2.0.11
3 #
4 # Do not make changes to this file unless you know what you are doing--modify
5 # the SWIG interface file instead.
6 
7 
8 
9 
10 
11 from sys import version_info
12 if version_info >= (2,6,0):
13  def swig_import_helper():
14  from os.path import dirname
15  import imp
16  fp = None
17  try:
18  fp, pathname, description = imp.find_module('_IMP_gsl', [dirname(__file__)])
19  except ImportError:
20  import _IMP_gsl
21  return _IMP_gsl
22  if fp is not None:
23  try:
24  _mod = imp.load_module('_IMP_gsl', fp, pathname, description)
25  finally:
26  fp.close()
27  return _mod
28  _IMP_gsl = swig_import_helper()
29  del swig_import_helper
30 else:
31  import _IMP_gsl
32 del version_info
33 try:
34  _swig_property = property
35 except NameError:
36  pass # Python < 2.2 doesn't have 'property'.
37 def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
38  if (name == "thisown"): return self.this.own(value)
39  if (name == "this"):
40  if type(value).__name__ == 'SwigPyObject':
41  self.__dict__[name] = value
42  return
43  method = class_type.__swig_setmethods__.get(name,None)
44  if method: return method(self,value)
45  if (not static):
46  self.__dict__[name] = value
47  else:
48  raise AttributeError("You cannot add attributes to %s" % self)
49 
50 def _swig_setattr(self,class_type,name,value):
51  return _swig_setattr_nondynamic(self,class_type,name,value,0)
52 
53 def _swig_getattr(self,class_type,name):
54  if (name == "thisown"): return self.this.own()
55  method = class_type.__swig_getmethods__.get(name,None)
56  if method: return method(self)
57  raise AttributeError(name)
58 
59 def _swig_repr(self):
60  try: strthis = "proxy of " + self.this.__repr__()
61  except: strthis = ""
62  return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
63 
64 try:
65  _object = object
66  _newclass = 1
67 except AttributeError:
68  class _object : pass
69  _newclass = 0
70 
71 
72 try:
73  import weakref
74  weakref_proxy = weakref.proxy
75 except:
76  weakref_proxy = lambda x: x
77 
78 
79 class IMP_GSL_SwigPyIterator(_object):
80  """Proxy of C++ swig::IMP_GSL_SwigPyIterator class"""
81  __swig_setmethods__ = {}
82  __setattr__ = lambda self, name, value: _swig_setattr(self, IMP_GSL_SwigPyIterator, name, value)
83  __swig_getmethods__ = {}
84  __getattr__ = lambda self, name: _swig_getattr(self, IMP_GSL_SwigPyIterator, name)
85  def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined - class is abstract")
86  __repr__ = _swig_repr
87  __swig_destroy__ = _IMP_gsl.delete_IMP_GSL_SwigPyIterator
88  __del__ = lambda self : None;
89  def value(self):
90  """value(IMP_GSL_SwigPyIterator self) -> PyObject *"""
91  return _IMP_gsl.IMP_GSL_SwigPyIterator_value(self)
92 
93  def incr(self, n=1):
94  """
95  incr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
96  incr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
97  """
98  return _IMP_gsl.IMP_GSL_SwigPyIterator_incr(self, n)
99 
100  def decr(self, n=1):
101  """
102  decr(IMP_GSL_SwigPyIterator self, size_t n=1) -> IMP_GSL_SwigPyIterator
103  decr(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator
104  """
105  return _IMP_gsl.IMP_GSL_SwigPyIterator_decr(self, n)
106 
107  def distance(self, *args):
108  """distance(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t"""
109  return _IMP_gsl.IMP_GSL_SwigPyIterator_distance(self, *args)
110 
111  def equal(self, *args):
112  """equal(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
113  return _IMP_gsl.IMP_GSL_SwigPyIterator_equal(self, *args)
114 
115  def copy(self):
116  """copy(IMP_GSL_SwigPyIterator self) -> IMP_GSL_SwigPyIterator"""
117  return _IMP_gsl.IMP_GSL_SwigPyIterator_copy(self)
118 
119  def next(self):
120  """next(IMP_GSL_SwigPyIterator self) -> PyObject *"""
121  return _IMP_gsl.IMP_GSL_SwigPyIterator_next(self)
122 
123  def __next__(self):
124  """__next__(IMP_GSL_SwigPyIterator self) -> PyObject *"""
125  return _IMP_gsl.IMP_GSL_SwigPyIterator___next__(self)
126 
127  def previous(self):
128  """previous(IMP_GSL_SwigPyIterator self) -> PyObject *"""
129  return _IMP_gsl.IMP_GSL_SwigPyIterator_previous(self)
130 
131  def advance(self, *args):
132  """advance(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
133  return _IMP_gsl.IMP_GSL_SwigPyIterator_advance(self, *args)
134 
135  def __eq__(self, *args):
136  """__eq__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
137  return _IMP_gsl.IMP_GSL_SwigPyIterator___eq__(self, *args)
138 
139  def __ne__(self, *args):
140  """__ne__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> bool"""
141  return _IMP_gsl.IMP_GSL_SwigPyIterator___ne__(self, *args)
142 
143  def __iadd__(self, *args):
144  """__iadd__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
145  return _IMP_gsl.IMP_GSL_SwigPyIterator___iadd__(self, *args)
146 
147  def __isub__(self, *args):
148  """__isub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
149  return _IMP_gsl.IMP_GSL_SwigPyIterator___isub__(self, *args)
150 
151  def __add__(self, *args):
152  """__add__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator"""
153  return _IMP_gsl.IMP_GSL_SwigPyIterator___add__(self, *args)
154 
155  def __sub__(self, *args):
156  """
157  __sub__(IMP_GSL_SwigPyIterator self, ptrdiff_t n) -> IMP_GSL_SwigPyIterator
158  __sub__(IMP_GSL_SwigPyIterator self, IMP_GSL_SwigPyIterator x) -> ptrdiff_t
159  """
160  return _IMP_gsl.IMP_GSL_SwigPyIterator___sub__(self, *args)
161 
162  def __iter__(self): return self
163 IMP_GSL_SwigPyIterator_swigregister = _IMP_gsl.IMP_GSL_SwigPyIterator_swigregister
164 IMP_GSL_SwigPyIterator_swigregister(IMP_GSL_SwigPyIterator)
165 
166 _value_types=[]
167 _object_types=[]
168 _raii_types=[]
169 _plural_types=[]
170 
171 IMP_DEBUG = _IMP_gsl.IMP_DEBUG
172 IMP_RELEASE = _IMP_gsl.IMP_RELEASE
173 IMP_SILENT = _IMP_gsl.IMP_SILENT
174 IMP_PROGRESS = _IMP_gsl.IMP_PROGRESS
175 IMP_TERSE = _IMP_gsl.IMP_TERSE
176 IMP_VERBOSE = _IMP_gsl.IMP_VERBOSE
177 IMP_MEMORY = _IMP_gsl.IMP_MEMORY
178 IMP_NONE = _IMP_gsl.IMP_NONE
179 IMP_USAGE = _IMP_gsl.IMP_USAGE
180 IMP_INTERNAL = _IMP_gsl.IMP_INTERNAL
181 IMP_BASE_HAS_LOG4CXX = _IMP_gsl.IMP_BASE_HAS_LOG4CXX
182 IMP_COMPILER_HAS_AUTO = _IMP_gsl.IMP_COMPILER_HAS_AUTO
183 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_gsl.IMP_COMPILER_HAS_DEBUG_VECTOR
184 IMP_BASE_HAS_BOOST_RANDOM = _IMP_gsl.IMP_BASE_HAS_BOOST_RANDOM
185 IMP_BASE_HAS_GPERFTOOLS = _IMP_gsl.IMP_BASE_HAS_GPERFTOOLS
186 IMP_BASE_HAS_TCMALLOC_HEAPCHECKER = _IMP_gsl.IMP_BASE_HAS_TCMALLOC_HEAPCHECKER
187 IMP_BASE_HAS_TCMALLOC_HEAPPROFILER = _IMP_gsl.IMP_BASE_HAS_TCMALLOC_HEAPPROFILER
188 IMPBASE_SHOW_WARNINGS = _IMP_gsl.IMPBASE_SHOW_WARNINGS
189 import sys
190 class _DirectorObjects(object):
191  """@internal Simple class to keep references to director objects
192  to prevent premature deletion."""
193  def __init__(self):
194  self._objects = []
195  def register(self, obj):
196  """Take a reference to a director object; will only work for
197  refcounted C++ classes"""
198  if hasattr(obj, 'get_ref_count'):
199  self._objects.append(obj)
200  def cleanup(self):
201  """Only drop our reference and allow cleanup by Python if no other
202  Python references exist (we hold 3 references: one in self._objects,
203  one in x, and one in the argument list for getrefcount) *and* no
204  other C++ references exist (the Python object always holds one)"""
205  objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
206  or x.get_ref_count() > 1]
207 
208 
209  self._objects = objs
210  def get_object_count(self):
211  """Get number of director objects (useful for testing only)"""
212  return len(self._objects)
213 _director_objects = _DirectorObjects()
214 
215 DEFAULT_CHECK = _IMP_gsl.DEFAULT_CHECK
216 NONE = _IMP_gsl.NONE
217 USAGE = _IMP_gsl.USAGE
218 USAGE_AND_INTERNAL = _IMP_gsl.USAGE_AND_INTERNAL
219 
220 def set_check_level(*args):
221  """set_check_level(IMP::base::CheckLevel tf)"""
222  return _IMP_gsl.set_check_level(*args)
223 
224 def get_check_level():
225  """get_check_level() -> IMP::base::CheckLevel"""
226  return _IMP_gsl.get_check_level()
227 class _ostream(_object):
228  """Proxy of C++ std::ostream class"""
229  __swig_setmethods__ = {}
230  __setattr__ = lambda self, name, value: _swig_setattr(self, _ostream, name, value)
231  __swig_getmethods__ = {}
232  __getattr__ = lambda self, name: _swig_getattr(self, _ostream, name)
233  def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
234  __repr__ = _swig_repr
235  def write(self, *args):
236  """write(_ostream self, char const * osa_buf)"""
237  return _IMP_gsl._ostream_write(self, *args)
238 
239 _ostream_swigregister = _IMP_gsl._ostream_swigregister
240 _ostream_swigregister(_ostream)
241 
242 IMP_COMPILER_HAS_OVERRIDE = _IMP_gsl.IMP_COMPILER_HAS_OVERRIDE
243 IMP_COMPILER_HAS_FINAL = _IMP_gsl.IMP_COMPILER_HAS_FINAL
244 IMP_HAS_NOEXCEPT = _IMP_gsl.IMP_HAS_NOEXCEPT
245 import IMP.base
246 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_FILESYSTEM
247 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
248 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_CGAL_HAS_BOOST_RANDOM
249 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_CGAL_HAS_BOOST_SYSTEM
250 IMPCGAL_SHOW_WARNINGS = _IMP_gsl.IMPCGAL_SHOW_WARNINGS
251 import IMP.cgal
252 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_IMP_CGAL
253 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
254 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
255 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_RANDOM
256 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_ALGEBRA_HAS_BOOST_SYSTEM
257 IMP_ALGEBRA_HAS_CGAL = _IMP_gsl.IMP_ALGEBRA_HAS_CGAL
258 IMP_ALGEBRA_HAS_ANN = _IMP_gsl.IMP_ALGEBRA_HAS_ANN
259 IMPALGEBRA_SHOW_WARNINGS = _IMP_gsl.IMPALGEBRA_SHOW_WARNINGS
260 import IMP.algebra
261 IMP_KERNEL_HAS_IMP_CGAL = _IMP_gsl.IMP_KERNEL_HAS_IMP_CGAL
262 IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS
263 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_RANDOM
264 IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_KERNEL_HAS_BOOST_SYSTEM
265 IMP_KERNEL_HAS_CGAL = _IMP_gsl.IMP_KERNEL_HAS_CGAL
266 IMPKERNEL_SHOW_WARNINGS = _IMP_gsl.IMPKERNEL_SHOW_WARNINGS
267 import IMP.kernel
268 IMP_GSL_HAS_IMP_BASE = _IMP_gsl.IMP_GSL_HAS_IMP_BASE
269 IMP_GSL_HAS_IMP_CGAL = _IMP_gsl.IMP_GSL_HAS_IMP_CGAL
270 IMP_GSL_HAS_BOOST_FILESYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_FILESYSTEM
271 IMP_GSL_HAS_BOOST_PROGRAMOPTIONS = _IMP_gsl.IMP_GSL_HAS_BOOST_PROGRAMOPTIONS
272 IMP_GSL_HAS_BOOST_RANDOM = _IMP_gsl.IMP_GSL_HAS_BOOST_RANDOM
273 IMP_GSL_HAS_BOOST_SYSTEM = _IMP_gsl.IMP_GSL_HAS_BOOST_SYSTEM
274 IMP_GSL_HAS_CGAL = _IMP_gsl.IMP_GSL_HAS_CGAL
275 IMPGSL_SHOW_WARNINGS = _IMP_gsl.IMPGSL_SHOW_WARNINGS
276 _object_types.append("GSLOptimizer")
277 
278 
279 def _object_cast_to_GSLOptimizer(*args):
280  """_object_cast_to_GSLOptimizer(Object o) -> GSLOptimizer"""
281  return _IMP_gsl._object_cast_to_GSLOptimizer(*args)
282 _object_types.append("ConjugateGradients")
283 
284 
285 def _object_cast_to_ConjugateGradients(*args):
286  """_object_cast_to_ConjugateGradients(Object o) -> ConjugateGradients"""
287  return _IMP_gsl._object_cast_to_ConjugateGradients(*args)
288 _object_types.append("QuasiNewton")
289 
290 
291 def _object_cast_to_QuasiNewton(*args):
292  """_object_cast_to_QuasiNewton(Object o) -> QuasiNewton"""
293  return _IMP_gsl._object_cast_to_QuasiNewton(*args)
294 _object_types.append("Simplex")
295 
296 
297 def _object_cast_to_Simplex(*args):
298  """_object_cast_to_Simplex(Object o) -> Simplex"""
299  return _IMP_gsl._object_cast_to_Simplex(*args)
300 class GSLOptimizer(IMP.kernel.AttributeOptimizer):
301  """Proxy of C++ IMP::gsl::GSLOptimizer class"""
302  __swig_setmethods__ = {}
303  for _s in [IMP.kernel.AttributeOptimizer]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
304  __setattr__ = lambda self, name, value: _swig_setattr(self, GSLOptimizer, name, value)
305  __swig_getmethods__ = {}
306  for _s in [IMP.kernel.AttributeOptimizer]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
307  __getattr__ = lambda self, name: _swig_getattr(self, GSLOptimizer, name)
308  def __init__(self, *args):
309  """
310  __init__(IMP::gsl::GSLOptimizer self, Model m) -> GSLOptimizer
311  __init__(IMP::gsl::GSLOptimizer self) -> GSLOptimizer
312  """
313  if self.__class__ == GSLOptimizer:
314  _self = None
315  else:
316  _self = self
317  this = _IMP_gsl.new_GSLOptimizer(_self, *args)
318  try: self.this.append(this)
319  except: self.this = this
320  if self.__class__ != GSLOptimizer:
321  import IMP.base
322  IMP.base._director_objects.register(self)
323 
324 
325 
326  __swig_destroy__ = _IMP_gsl.delete_GSLOptimizer
327  __del__ = lambda self : None;
328  def set_stop_score(self, *args):
329  """set_stop_score(GSLOptimizer self, double d)"""
330  return _IMP_gsl.GSLOptimizer_set_stop_score(self, *args)
331 
332  def __str__(self):
333  """__str__(GSLOptimizer self) -> std::string"""
334  return _IMP_gsl.GSLOptimizer___str__(self)
335 
336  def __repr__(self):
337  """__repr__(GSLOptimizer self) -> std::string"""
338  return _IMP_gsl.GSLOptimizer___repr__(self)
339 
340  def get_from(o):
341  return _object_cast_to_GSLOptimizer(o)
342  get_from = staticmethod(get_from)
343 
344  def get_type_name(self):
345  return self.__class__.__name__
346  def do_show(self, out):
347  pass
348  def get_version_info(self):
349  if"IMP::gsl" == "IMP":
350  return VersionInfo("python", "0")
351  else:
352  return IMP.VersionInfo("python", "0")
353  def get_from(o):
354  return _object_cast_to_GSLOptimizer(o)
355  get_from = staticmethod(get_from)
356 
357  def __disown__(self):
358  self.this.disown()
359  _IMP_gsl.disown_GSLOptimizer(self)
360  return weakref_proxy(self)
361  def handle_set_has_required_score_states(self, *args):
362  """handle_set_has_required_score_states(GSLOptimizer self, bool arg0)"""
363  return _IMP_gsl.GSLOptimizer_handle_set_has_required_score_states(self, *args)
364 
365  def do_get_inputs(self):
366  """do_get_inputs(GSLOptimizer self) -> IMP::kernel::ModelObjectsTemp"""
367  return _IMP_gsl.GSLOptimizer_do_get_inputs(self)
368 
369  def do_get_outputs(self):
370  """do_get_outputs(GSLOptimizer self) -> IMP::kernel::ModelObjectsTemp"""
371  return _IMP_gsl.GSLOptimizer_do_get_outputs(self)
372 
373  def do_get_interactions(self):
374  """do_get_interactions(GSLOptimizer self) -> IMP::kernel::ModelObjectsTemps"""
375  return _IMP_gsl.GSLOptimizer_do_get_interactions(self)
376 
377  def do_optimize(self, *args):
378  """do_optimize(GSLOptimizer self, unsigned int ns) -> double"""
379  return _IMP_gsl.GSLOptimizer_do_optimize(self, *args)
380 
381 GSLOptimizer_swigregister = _IMP_gsl.GSLOptimizer_swigregister
382 GSLOptimizer_swigregister(GSLOptimizer)
383 
384 class ConjugateGradients(GSLOptimizer):
385  """Proxy of C++ IMP::gsl::ConjugateGradients class"""
386  __swig_setmethods__ = {}
387  for _s in [GSLOptimizer]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
388  __setattr__ = lambda self, name, value: _swig_setattr(self, ConjugateGradients, name, value)
389  __swig_getmethods__ = {}
390  for _s in [GSLOptimizer]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
391  __getattr__ = lambda self, name: _swig_getattr(self, ConjugateGradients, name)
392  def __init__(self, *args):
393  """
394  __init__(IMP::gsl::ConjugateGradients self, Model m) -> ConjugateGradients
395  __init__(IMP::gsl::ConjugateGradients self) -> ConjugateGradients
396  """
397  this = _IMP_gsl.new_ConjugateGradients(*args)
398  try: self.this.append(this)
399  except: self.this = this
400  def set_threshold(self, *args):
401  """set_threshold(ConjugateGradients self, double mg)"""
402  return _IMP_gsl.ConjugateGradients_set_threshold(self, *args)
403 
404  def do_optimize(self, *args):
405  """do_optimize(ConjugateGradients self, unsigned int max_steps) -> IMP::Float"""
406  return _IMP_gsl.ConjugateGradients_do_optimize(self, *args)
407 
408  def get_version_info(self):
409  """get_version_info(ConjugateGradients self) -> VersionInfo"""
410  return _IMP_gsl.ConjugateGradients_get_version_info(self)
411 
412  __swig_destroy__ = _IMP_gsl.delete_ConjugateGradients
413  __del__ = lambda self : None;
414  def __str__(self):
415  """__str__(ConjugateGradients self) -> std::string"""
416  return _IMP_gsl.ConjugateGradients___str__(self)
417 
418  def __repr__(self):
419  """__repr__(ConjugateGradients self) -> std::string"""
420  return _IMP_gsl.ConjugateGradients___repr__(self)
421 
422  def get_from(o):
423  return _object_cast_to_ConjugateGradients(o)
424  get_from = staticmethod(get_from)
425 
426 ConjugateGradients_swigregister = _IMP_gsl.ConjugateGradients_swigregister
427 ConjugateGradients_swigregister(ConjugateGradients)
428 
429 class QuasiNewton(GSLOptimizer):
430  """Proxy of C++ IMP::gsl::QuasiNewton class"""
431  __swig_setmethods__ = {}
432  for _s in [GSLOptimizer]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
433  __setattr__ = lambda self, name, value: _swig_setattr(self, QuasiNewton, name, value)
434  __swig_getmethods__ = {}
435  for _s in [GSLOptimizer]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
436  __getattr__ = lambda self, name: _swig_getattr(self, QuasiNewton, name)
437  def __init__(self, *args):
438  """
439  __init__(IMP::gsl::QuasiNewton self, Model m) -> QuasiNewton
440  __init__(IMP::gsl::QuasiNewton self) -> QuasiNewton
441  """
442  this = _IMP_gsl.new_QuasiNewton(*args)
443  try: self.this.append(this)
444  except: self.this = this
445  def set_initial_step(self, *args):
446  """set_initial_step(QuasiNewton self, double length)"""
447  return _IMP_gsl.QuasiNewton_set_initial_step(self, *args)
448 
449  def set_line_step(self, *args):
450  """set_line_step(QuasiNewton self, double d)"""
451  return _IMP_gsl.QuasiNewton_set_line_step(self, *args)
452 
453  def set_minimum_gradient(self, *args):
454  """set_minimum_gradient(QuasiNewton self, double d)"""
455  return _IMP_gsl.QuasiNewton_set_minimum_gradient(self, *args)
456 
457  def do_optimize(self, *args):
458  """do_optimize(QuasiNewton self, unsigned int max_steps) -> IMP::Float"""
459  return _IMP_gsl.QuasiNewton_do_optimize(self, *args)
460 
461  def get_version_info(self):
462  """get_version_info(QuasiNewton self) -> VersionInfo"""
463  return _IMP_gsl.QuasiNewton_get_version_info(self)
464 
465  __swig_destroy__ = _IMP_gsl.delete_QuasiNewton
466  __del__ = lambda self : None;
467  def __str__(self):
468  """__str__(QuasiNewton self) -> std::string"""
469  return _IMP_gsl.QuasiNewton___str__(self)
470 
471  def __repr__(self):
472  """__repr__(QuasiNewton self) -> std::string"""
473  return _IMP_gsl.QuasiNewton___repr__(self)
474 
475  def get_from(o):
476  return _object_cast_to_QuasiNewton(o)
477  get_from = staticmethod(get_from)
478 
479 QuasiNewton_swigregister = _IMP_gsl.QuasiNewton_swigregister
480 QuasiNewton_swigregister(QuasiNewton)
481 
482 class Simplex(GSLOptimizer):
483  """Proxy of C++ IMP::gsl::Simplex class"""
484  __swig_setmethods__ = {}
485  for _s in [GSLOptimizer]: __swig_setmethods__.update(getattr(_s,'__swig_setmethods__',{}))
486  __setattr__ = lambda self, name, value: _swig_setattr(self, Simplex, name, value)
487  __swig_getmethods__ = {}
488  for _s in [GSLOptimizer]: __swig_getmethods__.update(getattr(_s,'__swig_getmethods__',{}))
489  __getattr__ = lambda self, name: _swig_getattr(self, Simplex, name)
490  def __init__(self, *args):
491  """
492  __init__(IMP::gsl::Simplex self, Model m) -> Simplex
493  __init__(IMP::gsl::Simplex self) -> Simplex
494  """
495  this = _IMP_gsl.new_Simplex(*args)
496  try: self.this.append(this)
497  except: self.this = this
498  def set_initial_length(self, *args):
499  """set_initial_length(Simplex self, double length)"""
500  return _IMP_gsl.Simplex_set_initial_length(self, *args)
501 
502  def set_minimum_size(self, *args):
503  """set_minimum_size(Simplex self, double d)"""
504  return _IMP_gsl.Simplex_set_minimum_size(self, *args)
505 
506  def do_optimize(self, *args):
507  """do_optimize(Simplex self, unsigned int max_steps) -> IMP::Float"""
508  return _IMP_gsl.Simplex_do_optimize(self, *args)
509 
510  def get_version_info(self):
511  """get_version_info(Simplex self) -> VersionInfo"""
512  return _IMP_gsl.Simplex_get_version_info(self)
513 
514  __swig_destroy__ = _IMP_gsl.delete_Simplex
515  __del__ = lambda self : None;
516  def __str__(self):
517  """__str__(Simplex self) -> std::string"""
518  return _IMP_gsl.Simplex___str__(self)
519 
520  def __repr__(self):
521  """__repr__(Simplex self) -> std::string"""
522  return _IMP_gsl.Simplex___repr__(self)
523 
524  def get_from(o):
525  return _object_cast_to_Simplex(o)
526  get_from = staticmethod(get_from)
527 
528 Simplex_swigregister = _IMP_gsl.Simplex_swigregister
529 Simplex_swigregister(Simplex)
530 
531 
532 def get_module_version():
533  """get_module_version() -> std::string const"""
534  return _IMP_gsl.get_module_version()
535 
536 def get_example_path(*args):
537  """get_example_path(std::string fname) -> std::string"""
538  return _IMP_gsl.get_example_path(*args)
539 
540 def get_data_path(*args):
541  """get_data_path(std::string fname) -> std::string"""
542  return _IMP_gsl.get_data_path(*args)
543 import _version_check
544 _version_check.check_version(get_module_version())
545 
546 # This file is compatible with both classic and new-style classes.
547 
548 
See IMP.cgal for more information.
Definition: cgal_config.h:107
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
See IMP.base for more information.
Definition: base/Array.h:20
std::string get_data_path(std::string file_name)
Return the full path to installed data.
See IMP.kernel for more information.
Base class for optimizers that act on individual attributes.
std::string get_example_path(std::string file_name)
Return the path to installed example data for this module.
See IMP.algebra for more information.
CheckLevel get_check_level()
Get the current audit mode.