11 from sys
import version_info
12 if version_info >= (2,6,0):
13 def swig_import_helper():
14 from os.path
import dirname
18 fp, pathname, description = imp.find_module(
'_IMP_example', [dirname(__file__)])
24 _mod = imp.load_module(
'_IMP_example', fp, pathname, description)
28 _IMP_example = swig_import_helper()
29 del swig_import_helper
34 _swig_property = property
37 def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
38 if (name ==
"thisown"):
return self.this.own(value)
40 if type(value).__name__ ==
'SwigPyObject':
41 self.__dict__[name] = value
43 method = class_type.__swig_setmethods__.get(name,
None)
44 if method:
return method(self,value)
46 self.__dict__[name] = value
48 raise AttributeError(
"You cannot add attributes to %s" % self)
50 def _swig_setattr(self,class_type,name,value):
51 return _swig_setattr_nondynamic(self,class_type,name,value,0)
53 def _swig_getattr(self,class_type,name):
54 if (name ==
"thisown"):
return self.this.own()
55 method = class_type.__swig_getmethods__.get(name,
None)
56 if method:
return method(self)
57 raise AttributeError(name)
60 try: strthis =
"proxy of " + self.this.__repr__()
62 return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)
67 except AttributeError:
74 weakref_proxy = weakref.proxy
76 weakref_proxy =
lambda x: x
79 class IMP_EXAMPLE_SwigPyIterator(_object):
80 """Proxy of C++ swig::IMP_EXAMPLE_SwigPyIterator class"""
81 __swig_setmethods__ = {}
82 __setattr__ =
lambda self, name, value: _swig_setattr(self, IMP_EXAMPLE_SwigPyIterator, name, value)
83 __swig_getmethods__ = {}
84 __getattr__ =
lambda self, name: _swig_getattr(self, IMP_EXAMPLE_SwigPyIterator, name)
85 def __init__(self, *args, **kwargs):
raise AttributeError(
"No constructor defined - class is abstract")
87 __swig_destroy__ = _IMP_example.delete_IMP_EXAMPLE_SwigPyIterator
88 __del__ =
lambda self :
None;
90 """value(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
91 return _IMP_example.IMP_EXAMPLE_SwigPyIterator_value(self)
95 incr(IMP_EXAMPLE_SwigPyIterator self, size_t n=1) -> IMP_EXAMPLE_SwigPyIterator
96 incr(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator
98 return _IMP_example.IMP_EXAMPLE_SwigPyIterator_incr(self, n)
102 decr(IMP_EXAMPLE_SwigPyIterator self, size_t n=1) -> IMP_EXAMPLE_SwigPyIterator
103 decr(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator
105 return _IMP_example.IMP_EXAMPLE_SwigPyIterator_decr(self, n)
107 def distance(self, *args):
108 """distance(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> ptrdiff_t"""
109 return _IMP_example.IMP_EXAMPLE_SwigPyIterator_distance(self, *args)
111 def equal(self, *args):
112 """equal(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
113 return _IMP_example.IMP_EXAMPLE_SwigPyIterator_equal(self, *args)
116 """copy(IMP_EXAMPLE_SwigPyIterator self) -> IMP_EXAMPLE_SwigPyIterator"""
117 return _IMP_example.IMP_EXAMPLE_SwigPyIterator_copy(self)
120 """next(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
121 return _IMP_example.IMP_EXAMPLE_SwigPyIterator_next(self)
124 """__next__(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
125 return _IMP_example.IMP_EXAMPLE_SwigPyIterator___next__(self)
128 """previous(IMP_EXAMPLE_SwigPyIterator self) -> PyObject *"""
129 return _IMP_example.IMP_EXAMPLE_SwigPyIterator_previous(self)
131 def advance(self, *args):
132 """advance(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
133 return _IMP_example.IMP_EXAMPLE_SwigPyIterator_advance(self, *args)
135 def __eq__(self, *args):
136 """__eq__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
137 return _IMP_example.IMP_EXAMPLE_SwigPyIterator___eq__(self, *args)
139 def __ne__(self, *args):
140 """__ne__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> bool"""
141 return _IMP_example.IMP_EXAMPLE_SwigPyIterator___ne__(self, *args)
143 def __iadd__(self, *args):
144 """__iadd__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
145 return _IMP_example.IMP_EXAMPLE_SwigPyIterator___iadd__(self, *args)
147 def __isub__(self, *args):
148 """__isub__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
149 return _IMP_example.IMP_EXAMPLE_SwigPyIterator___isub__(self, *args)
151 def __add__(self, *args):
152 """__add__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator"""
153 return _IMP_example.IMP_EXAMPLE_SwigPyIterator___add__(self, *args)
155 def __sub__(self, *args):
157 __sub__(IMP_EXAMPLE_SwigPyIterator self, ptrdiff_t n) -> IMP_EXAMPLE_SwigPyIterator
158 __sub__(IMP_EXAMPLE_SwigPyIterator self, IMP_EXAMPLE_SwigPyIterator x) -> ptrdiff_t
160 return _IMP_example.IMP_EXAMPLE_SwigPyIterator___sub__(self, *args)
162 def __iter__(self):
return self
163 IMP_EXAMPLE_SwigPyIterator_swigregister = _IMP_example.IMP_EXAMPLE_SwigPyIterator_swigregister
164 IMP_EXAMPLE_SwigPyIterator_swigregister(IMP_EXAMPLE_SwigPyIterator)
171 IMP_DEBUG = _IMP_example.IMP_DEBUG
172 IMP_RELEASE = _IMP_example.IMP_RELEASE
173 IMP_SILENT = _IMP_example.IMP_SILENT
174 IMP_PROGRESS = _IMP_example.IMP_PROGRESS
175 IMP_TERSE = _IMP_example.IMP_TERSE
176 IMP_VERBOSE = _IMP_example.IMP_VERBOSE
177 IMP_MEMORY = _IMP_example.IMP_MEMORY
178 IMP_NONE = _IMP_example.IMP_NONE
179 IMP_USAGE = _IMP_example.IMP_USAGE
180 IMP_INTERNAL = _IMP_example.IMP_INTERNAL
181 IMP_BASE_HAS_LOG4CXX = _IMP_example.IMP_BASE_HAS_LOG4CXX
182 IMP_COMPILER_HAS_AUTO = _IMP_example.IMP_COMPILER_HAS_AUTO
183 IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_example.IMP_COMPILER_HAS_DEBUG_VECTOR
184 IMP_BASE_HAS_BOOST_RANDOM = _IMP_example.IMP_BASE_HAS_BOOST_RANDOM
185 IMP_BASE_HAS_GPERFTOOLS = _IMP_example.IMP_BASE_HAS_GPERFTOOLS
186 IMP_BASE_HAS_TCMALLOC_HEAPCHECKER = _IMP_example.IMP_BASE_HAS_TCMALLOC_HEAPCHECKER
187 IMP_BASE_HAS_TCMALLOC_HEAPPROFILER = _IMP_example.IMP_BASE_HAS_TCMALLOC_HEAPPROFILER
188 IMPBASE_SHOW_WARNINGS = _IMP_example.IMPBASE_SHOW_WARNINGS
190 class _DirectorObjects(object):
191 """@internal Simple class to keep references to director objects
192 to prevent premature deletion."""
195 def register(self, obj):
196 """Take a reference to a director object; will only work for
197 refcounted C++ classes"""
198 if hasattr(obj,
'get_ref_count'):
199 self._objects.append(obj)
201 """Only drop our reference and allow cleanup by Python if no other
202 Python references exist (we hold 3 references: one in self._objects,
203 one in x, and one in the argument list for getrefcount) *and* no
204 other C++ references exist (the Python object always holds one)"""
205 objs = [x
for x
in self._objects
if sys.getrefcount(x) > 3 \
206 or x.get_ref_count() > 1]
210 def get_object_count(self):
211 """Get number of director objects (useful for testing only)"""
212 return len(self._objects)
213 _director_objects = _DirectorObjects()
215 DEFAULT_CHECK = _IMP_example.DEFAULT_CHECK
216 NONE = _IMP_example.NONE
217 USAGE = _IMP_example.USAGE
218 USAGE_AND_INTERNAL = _IMP_example.USAGE_AND_INTERNAL
221 """set_check_level(IMP::base::CheckLevel tf)"""
222 return _IMP_example.set_check_level(*args)
225 """get_check_level() -> IMP::base::CheckLevel"""
226 return _IMP_example.get_check_level()
227 class _ostream(_object):
228 """Proxy of C++ std::ostream class"""
229 __swig_setmethods__ = {}
230 __setattr__ =
lambda self, name, value: _swig_setattr(self, _ostream, name, value)
231 __swig_getmethods__ = {}
232 __getattr__ =
lambda self, name: _swig_getattr(self, _ostream, name)
233 def __init__(self, *args, **kwargs):
raise AttributeError(
"No constructor defined")
234 __repr__ = _swig_repr
235 def write(self, *args):
236 """write(_ostream self, char const * osa_buf)"""
237 return _IMP_example._ostream_write(self, *args)
239 _ostream_swigregister = _IMP_example._ostream_swigregister
240 _ostream_swigregister(_ostream)
242 IMP_COMPILER_HAS_OVERRIDE = _IMP_example.IMP_COMPILER_HAS_OVERRIDE
243 IMP_COMPILER_HAS_FINAL = _IMP_example.IMP_COMPILER_HAS_FINAL
244 IMP_HAS_NOEXCEPT = _IMP_example.IMP_HAS_NOEXCEPT
246 IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CGAL_HAS_BOOST_FILESYSTEM
247 IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
248 IMP_CGAL_HAS_BOOST_RANDOM = _IMP_example.IMP_CGAL_HAS_BOOST_RANDOM
249 IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_example.IMP_CGAL_HAS_BOOST_SYSTEM
250 IMPCGAL_SHOW_WARNINGS = _IMP_example.IMPCGAL_SHOW_WARNINGS
252 IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_example.IMP_ALGEBRA_HAS_IMP_CGAL
253 IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
254 IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
255 IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_RANDOM
256 IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_example.IMP_ALGEBRA_HAS_BOOST_SYSTEM
257 IMP_ALGEBRA_HAS_CGAL = _IMP_example.IMP_ALGEBRA_HAS_CGAL
258 IMP_ALGEBRA_HAS_ANN = _IMP_example.IMP_ALGEBRA_HAS_ANN
259 IMPALGEBRA_SHOW_WARNINGS = _IMP_example.IMPALGEBRA_SHOW_WARNINGS
261 IMP_KERNEL_HAS_IMP_CGAL = _IMP_example.IMP_KERNEL_HAS_IMP_CGAL
262 IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS
263 IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_example.IMP_KERNEL_HAS_BOOST_RANDOM
264 IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_example.IMP_KERNEL_HAS_BOOST_SYSTEM
265 IMP_KERNEL_HAS_CGAL = _IMP_example.IMP_KERNEL_HAS_CGAL
266 IMPKERNEL_SHOW_WARNINGS = _IMP_example.IMPKERNEL_SHOW_WARNINGS
268 IMP_DISPLAY_HAS_IMP_BASE = _IMP_example.IMP_DISPLAY_HAS_IMP_BASE
269 IMP_DISPLAY_HAS_IMP_CGAL = _IMP_example.IMP_DISPLAY_HAS_IMP_CGAL
270 IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
271 IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
272 IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_example.IMP_DISPLAY_HAS_BOOST_RANDOM
273 IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_example.IMP_DISPLAY_HAS_BOOST_SYSTEM
274 IMP_DISPLAY_HAS_CGAL = _IMP_example.IMP_DISPLAY_HAS_CGAL
275 IMPDISPLAY_SHOW_WARNINGS = _IMP_example.IMPDISPLAY_SHOW_WARNINGS
277 IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_example.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
278 IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
279 IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
280 IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
281 IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_example.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
282 IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_example.IMP_SCORE_FUNCTOR_HAS_CGAL
283 IMPSCOREFUNCTOR_SHOW_WARNINGS = _IMP_example.IMPSCOREFUNCTOR_SHOW_WARNINGS
285 IMP_STATISTICS_HAS_IMP_BASE = _IMP_example.IMP_STATISTICS_HAS_IMP_BASE
286 IMP_STATISTICS_HAS_IMP_CGAL = _IMP_example.IMP_STATISTICS_HAS_IMP_CGAL
287 IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
288 IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
289 IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_example.IMP_STATISTICS_HAS_BOOST_RANDOM
290 IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_example.IMP_STATISTICS_HAS_BOOST_SYSTEM
291 IMP_STATISTICS_HAS_CGAL = _IMP_example.IMP_STATISTICS_HAS_CGAL
292 IMPSTATISTICS_SHOW_WARNINGS = _IMP_example.IMPSTATISTICS_SHOW_WARNINGS
294 IMP_CORE_HAS_IMP_BASE = _IMP_example.IMP_CORE_HAS_IMP_BASE
295 IMP_CORE_HAS_IMP_CGAL = _IMP_example.IMP_CORE_HAS_IMP_CGAL
296 IMP_CORE_HAS_IMP_KERNEL = _IMP_example.IMP_CORE_HAS_IMP_KERNEL
297 IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CORE_HAS_BOOST_FILESYSTEM
298 IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
299 IMP_CORE_HAS_BOOST_RANDOM = _IMP_example.IMP_CORE_HAS_BOOST_RANDOM
300 IMP_CORE_HAS_BOOST_SYSTEM = _IMP_example.IMP_CORE_HAS_BOOST_SYSTEM
301 IMP_CORE_HAS_CGAL = _IMP_example.IMP_CORE_HAS_CGAL
302 IMPCORE_SHOW_WARNINGS = _IMP_example.IMPCORE_SHOW_WARNINGS
304 IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_example.IMP_CONTAINER_HAS_IMP_ALGEBRA
305 IMP_CONTAINER_HAS_IMP_BASE = _IMP_example.IMP_CONTAINER_HAS_IMP_BASE
306 IMP_CONTAINER_HAS_IMP_CGAL = _IMP_example.IMP_CONTAINER_HAS_IMP_CGAL
307 IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_example.IMP_CONTAINER_HAS_IMP_DISPLAY
308 IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_example.IMP_CONTAINER_HAS_IMP_KERNEL
309 IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
310 IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
311 IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
312 IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_example.IMP_CONTAINER_HAS_BOOST_RANDOM
313 IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_example.IMP_CONTAINER_HAS_BOOST_SYSTEM
314 IMP_CONTAINER_HAS_CGAL = _IMP_example.IMP_CONTAINER_HAS_CGAL
315 IMPCONTAINER_SHOW_WARNINGS = _IMP_example.IMPCONTAINER_SHOW_WARNINGS
317 IMP_ATOM_HAS_IMP_BASE = _IMP_example.IMP_ATOM_HAS_IMP_BASE
318 IMP_ATOM_HAS_IMP_CGAL = _IMP_example.IMP_ATOM_HAS_IMP_CGAL
319 IMP_ATOM_HAS_IMP_KERNEL = _IMP_example.IMP_ATOM_HAS_IMP_KERNEL
320 IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
321 IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
322 IMP_ATOM_HAS_BOOST_RANDOM = _IMP_example.IMP_ATOM_HAS_BOOST_RANDOM
323 IMP_ATOM_HAS_BOOST_REGEX = _IMP_example.IMP_ATOM_HAS_BOOST_REGEX
324 IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_example.IMP_ATOM_HAS_BOOST_SYSTEM
325 IMP_ATOM_HAS_CGAL = _IMP_example.IMP_ATOM_HAS_CGAL
326 IMPATOM_SHOW_WARNINGS = _IMP_example.IMPATOM_SHOW_WARNINGS
327 IMP_ATOM_TYPE_INDEX = _IMP_example.IMP_ATOM_TYPE_INDEX
328 IMP_RESIDUE_TYPE_INDEX = _IMP_example.IMP_RESIDUE_TYPE_INDEX
329 IMP_HIERARCHY_TYPE_INDEX = _IMP_example.IMP_HIERARCHY_TYPE_INDEX
331 IMP_RMF_HAS_IMP_BASE = _IMP_example.IMP_RMF_HAS_IMP_BASE
332 IMP_RMF_HAS_IMP_CGAL = _IMP_example.IMP_RMF_HAS_IMP_CGAL
333 IMP_RMF_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_RMF_HAS_IMP_SCORE_FUNCTOR
334 IMP_RMF_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_RMF_HAS_BOOST_FILESYSTEM
335 IMP_RMF_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_RMF_HAS_BOOST_PROGRAMOPTIONS
336 IMP_RMF_HAS_BOOST_RANDOM = _IMP_example.IMP_RMF_HAS_BOOST_RANDOM
337 IMP_RMF_HAS_BOOST_REGEX = _IMP_example.IMP_RMF_HAS_BOOST_REGEX
338 IMP_RMF_HAS_BOOST_SYSTEM = _IMP_example.IMP_RMF_HAS_BOOST_SYSTEM
339 IMP_RMF_HAS_CGAL = _IMP_example.IMP_RMF_HAS_CGAL
340 IMPRMF_SHOW_WARNINGS = _IMP_example.IMPRMF_SHOW_WARNINGS
343 IMP_DOMINO_HAS_IMP_ATOM = _IMP_example.IMP_DOMINO_HAS_IMP_ATOM
344 IMP_DOMINO_HAS_IMP_BASE = _IMP_example.IMP_DOMINO_HAS_IMP_BASE
345 IMP_DOMINO_HAS_IMP_CGAL = _IMP_example.IMP_DOMINO_HAS_IMP_CGAL
346 IMP_DOMINO_HAS_IMP_KERNEL = _IMP_example.IMP_DOMINO_HAS_IMP_KERNEL
347 IMP_DOMINO_HAS_IMP_RMF = _IMP_example.IMP_DOMINO_HAS_IMP_RMF
348 IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_DOMINO_HAS_IMP_SCORE_FUNCTOR
349 IMP_DOMINO_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_DOMINO_HAS_BOOST_FILESYSTEM
350 IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_DOMINO_HAS_BOOST_PROGRAMOPTIONS
351 IMP_DOMINO_HAS_BOOST_RANDOM = _IMP_example.IMP_DOMINO_HAS_BOOST_RANDOM
352 IMP_DOMINO_HAS_BOOST_REGEX = _IMP_example.IMP_DOMINO_HAS_BOOST_REGEX
353 IMP_DOMINO_HAS_BOOST_SYSTEM = _IMP_example.IMP_DOMINO_HAS_BOOST_SYSTEM
354 IMP_DOMINO_HAS_CGAL = _IMP_example.IMP_DOMINO_HAS_CGAL
355 IMP_DOMINO_HAS_HDF5 = _IMP_example.IMP_DOMINO_HAS_HDF5
356 IMP_DOMINO_HAS_RMF = _IMP_example.IMP_DOMINO_HAS_RMF
357 IMPDOMINO_SHOW_WARNINGS = _IMP_example.IMPDOMINO_SHOW_WARNINGS
360 IMP_EXAMPLE_HAS_IMP_ALGEBRA = _IMP_example.IMP_EXAMPLE_HAS_IMP_ALGEBRA
361 IMP_EXAMPLE_HAS_IMP_BASE = _IMP_example.IMP_EXAMPLE_HAS_IMP_BASE
362 IMP_EXAMPLE_HAS_IMP_CGAL = _IMP_example.IMP_EXAMPLE_HAS_IMP_CGAL
363 IMP_EXAMPLE_HAS_IMP_DISPLAY = _IMP_example.IMP_EXAMPLE_HAS_IMP_DISPLAY
364 IMP_EXAMPLE_HAS_IMP_KERNEL = _IMP_example.IMP_EXAMPLE_HAS_IMP_KERNEL
365 IMP_EXAMPLE_HAS_IMP_RMF = _IMP_example.IMP_EXAMPLE_HAS_IMP_RMF
366 IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR = _IMP_example.IMP_EXAMPLE_HAS_IMP_SCORE_FUNCTOR
367 IMP_EXAMPLE_HAS_IMP_STATISTICS = _IMP_example.IMP_EXAMPLE_HAS_IMP_STATISTICS
368 IMP_EXAMPLE_HAS_BOOST_FILESYSTEM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_FILESYSTEM
369 IMP_EXAMPLE_HAS_BOOST_GRAPH = _IMP_example.IMP_EXAMPLE_HAS_BOOST_GRAPH
370 IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS = _IMP_example.IMP_EXAMPLE_HAS_BOOST_PROGRAMOPTIONS
371 IMP_EXAMPLE_HAS_BOOST_RANDOM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_RANDOM
372 IMP_EXAMPLE_HAS_BOOST_REGEX = _IMP_example.IMP_EXAMPLE_HAS_BOOST_REGEX
373 IMP_EXAMPLE_HAS_BOOST_SYSTEM = _IMP_example.IMP_EXAMPLE_HAS_BOOST_SYSTEM
374 IMP_EXAMPLE_HAS_CGAL = _IMP_example.IMP_EXAMPLE_HAS_CGAL
375 IMP_EXAMPLE_HAS_HDF5 = _IMP_example.IMP_EXAMPLE_HAS_HDF5
376 IMP_EXAMPLE_HAS_RMF = _IMP_example.IMP_EXAMPLE_HAS_RMF
377 IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY = _IMP_example.IMP_EXAMPLE_HAS_EXAMPLEDEPENDENCY
378 IMPEXAMPLE_SHOW_WARNINGS = _IMP_example.IMPEXAMPLE_SHOW_WARNINGS
379 _object_types.append(
"ExampleRestraint")
382 def _object_cast_to_ExampleRestraint(*args):
383 """_object_cast_to_ExampleRestraint(Object o) -> ExampleRestraint"""
384 return _IMP_example._object_cast_to_ExampleRestraint(*args)
385 def ExampleDecorators(l=[]):
386 return [ExampleDecorator(x)
for x
in l]
387 _plural_types.append(
"ExampleDecorators")
389 _value_types.append(
"ExampleDecorator")
391 _object_types.append(
"ExampleUnaryFunction")
394 def _object_cast_to_ExampleUnaryFunction(*args):
395 """_object_cast_to_ExampleUnaryFunction(Object o) -> ExampleUnaryFunction"""
396 return _IMP_example._object_cast_to_ExampleUnaryFunction(*args)
397 _object_types.append(
"ExampleSingletonModifier")
400 def _object_cast_to_ExampleSingletonModifier(*args):
401 """_object_cast_to_ExampleSingletonModifier(Object o) -> ExampleSingletonModifier"""
402 return _IMP_example._object_cast_to_ExampleSingletonModifier(*args)
403 _object_types.append(
"ExamplePairScore")
406 def _object_cast_to_ExamplePairScore(*args):
407 """_object_cast_to_ExamplePairScore(Object o) -> ExamplePairScore"""
408 return _IMP_example._object_cast_to_ExamplePairScore(*args)
409 _object_types.append(
"ExampleSubsetFilterTable")
412 def _object_cast_to_ExampleSubsetFilterTable(*args):
413 """_object_cast_to_ExampleSubsetFilterTable(Object o) -> ExampleSubsetFilterTable"""
414 return _IMP_example._object_cast_to_ExampleSubsetFilterTable(*args)
415 _object_types.append(
"ExampleConstraint")
418 def _object_cast_to_ExampleConstraint(*args):
419 """_object_cast_to_ExampleConstraint(Object o) -> ExampleConstraint"""
420 return _IMP_example._object_cast_to_ExampleConstraint(*args)
421 _object_types.append(
"ExampleObject")
424 def _object_cast_to_ExampleObject(*args):
425 """_object_cast_to_ExampleObject(Object o) -> ExampleObject"""
426 return _IMP_example._object_cast_to_ExampleObject(*args)
427 ExampleTemplateClass3Ds=list
428 _plural_types.append(
"ExampleTemplateClass3Ds")
429 _value_types.append(
"ExampleTemplateClass3D")
431 def create_model_and_particles():
436 for i
in range(0,100):
440 d.set_coordinates_are_optimized(
True)
444 """Proxy of C++ IMP::example::ExampleRestraint class"""
445 __swig_setmethods__ = {}
446 for _s
in [
IMP.kernel.Restraint]: __swig_setmethods__.update(getattr(_s,
'__swig_setmethods__',{}))
447 __setattr__ =
lambda self, name, value: _swig_setattr(self, ExampleRestraint, name, value)
448 __swig_getmethods__ = {}
449 for _s
in [
IMP.kernel.Restraint]: __swig_getmethods__.update(getattr(_s,
'__swig_getmethods__',{}))
450 __getattr__ =
lambda self, name: _swig_getattr(self, ExampleRestraint, name)
451 def __init__(self, *args):
452 """__init__(IMP::example::ExampleRestraint self, Particle p, double k) -> ExampleRestraint"""
453 this = _IMP_example.new_ExampleRestraint(*args)
454 try: self.this.append(this)
455 except: self.this = this
456 def do_add_score_and_derivatives(self, *args):
457 """do_add_score_and_derivatives(ExampleRestraint self, ScoreAccumulator sa)"""
458 return _IMP_example.ExampleRestraint_do_add_score_and_derivatives(self, *args)
460 def do_get_inputs(self):
461 """do_get_inputs(ExampleRestraint self) -> IMP::kernel::ModelObjectsTemp"""
462 return _IMP_example.ExampleRestraint_do_get_inputs(self)
464 def get_version_info(self):
465 """get_version_info(ExampleRestraint self) -> VersionInfo"""
466 return _IMP_example.ExampleRestraint_get_version_info(self)
468 __swig_destroy__ = _IMP_example.delete_ExampleRestraint
469 __del__ =
lambda self :
None;
471 """__str__(ExampleRestraint self) -> std::string"""
472 return _IMP_example.ExampleRestraint___str__(self)
475 """__repr__(ExampleRestraint self) -> std::string"""
476 return _IMP_example.ExampleRestraint___repr__(self)
479 return _object_cast_to_ExampleRestraint(o)
480 get_from = staticmethod(get_from)
482 ExampleRestraint_swigregister = _IMP_example.ExampleRestraint_swigregister
483 ExampleRestraint_swigregister(ExampleRestraint)
486 """Proxy of C++ IMP::example::ExampleDecorator class"""
487 __swig_setmethods__ = {}
488 for _s
in [
IMP.kernel.Decorator]: __swig_setmethods__.update(getattr(_s,
'__swig_setmethods__',{}))
489 __setattr__ =
lambda self, name, value: _swig_setattr(self, ExampleDecorator, name, value)
490 __swig_getmethods__ = {}
491 for _s
in [
IMP.kernel.Decorator]: __swig_getmethods__.update(getattr(_s,
'__swig_getmethods__',{}))
492 __getattr__ =
lambda self, name: _swig_getattr(self, ExampleDecorator, name)
493 def get_decorator_name(self):
494 """get_decorator_name(ExampleDecorator self) -> std::string"""
495 return _IMP_example.ExampleDecorator_get_decorator_name(self)
497 def set_decorator_name(self, *args):
498 """set_decorator_name(ExampleDecorator self, std::string nm)"""
499 return _IMP_example.ExampleDecorator_set_decorator_name(self, *args)
501 def __init__(self, *args):
503 __init__(IMP::example::ExampleDecorator self) -> ExampleDecorator
504 __init__(IMP::example::ExampleDecorator self, Model m, ::IMP::kernel::ParticleIndex id) -> ExampleDecorator
505 __init__(IMP::example::ExampleDecorator self, _ParticleAdaptor d) -> ExampleDecorator
507 this = _IMP_example.new_ExampleDecorator(*args)
508 try: self.this.append(this)
509 except: self.this = this
510 def decorate_particle(*args):
511 """decorate_particle(Particle p) -> ExampleDecorator"""
512 return _IMP_example.ExampleDecorator_decorate_particle(*args)
514 if _newclass:decorate_particle = staticmethod(decorate_particle)
515 __swig_getmethods__[
"decorate_particle"] =
lambda x: decorate_particle
516 def particle_is_instance(*args):
518 particle_is_instance(Particle p) -> bool
519 particle_is_instance(Model m, IMP::kernel::ParticleIndex pi) -> bool
521 return _IMP_example.ExampleDecorator_particle_is_instance(*args)
523 if _newclass:particle_is_instance = staticmethod(particle_is_instance)
524 __swig_getmethods__[
"particle_is_instance"] =
lambda x: particle_is_instance
525 def get_is_setup(*args):
527 get_is_setup(Model m, IMP::kernel::ParticleIndex pi) -> bool
528 get_is_setup(_ParticleAdaptor p) -> bool
530 return _IMP_example.ExampleDecorator_get_is_setup(*args)
532 if _newclass:get_is_setup = staticmethod(get_is_setup)
533 __swig_getmethods__[
"get_is_setup"] =
lambda x: get_is_setup
534 def show(self, *args):
536 show(ExampleDecorator self, _ostream out=std::cout)
537 show(ExampleDecorator self)
539 return _IMP_example.ExampleDecorator_show(self, *args)
541 def setup_particle(*args):
543 setup_particle(Model m, IMP::kernel::ParticleIndex pi, std::string name) -> ExampleDecorator
544 setup_particle(_ParticleAdaptor decorator, std::string name) -> ExampleDecorator
546 return _IMP_example.ExampleDecorator_setup_particle(*args)
548 if _newclass:setup_particle = staticmethod(setup_particle)
549 __swig_getmethods__[
"setup_particle"] =
lambda x: setup_particle
550 def add_attribute(self, *args):
552 add_attribute(ExampleDecorator self, FloatKey k, IMP::Float v, bool opt)
553 add_attribute(ExampleDecorator self, FloatKey a0, IMP::Float a1)
554 add_attribute(ExampleDecorator self, IntKey a0, IMP::Int a1)
555 add_attribute(ExampleDecorator self, StringKey a0, IMP::String a1)
556 add_attribute(ExampleDecorator self, ParticleIndexKey a0, Particle a1)
557 add_attribute(ExampleDecorator self, ObjectKey a0, IMP::Object * a1)
559 return _IMP_example.ExampleDecorator_add_attribute(self, *args)
561 def get_value(self, *args):
563 get_value(ExampleDecorator self, FloatKey a0) -> IMP::Float
564 get_value(ExampleDecorator self, IntKey a0) -> IMP::Int
565 get_value(ExampleDecorator self, StringKey a0) -> IMP::String
566 get_value(ExampleDecorator self, ParticleIndexKey a0) -> Particle
567 get_value(ExampleDecorator self, ObjectKey a0) -> IMP::Object *
569 return _IMP_example.ExampleDecorator_get_value(self, *args)
571 def set_value(self, *args):
573 set_value(ExampleDecorator self, FloatKey a0, IMP::Float a1)
574 set_value(ExampleDecorator self, IntKey a0, IMP::Int a1)
575 set_value(ExampleDecorator self, StringKey a0, IMP::String a1)
576 set_value(ExampleDecorator self, ParticleIndexKey a0, Particle a1)
577 set_value(ExampleDecorator self, ObjectKey a0, IMP::Object * a1)
579 return _IMP_example.ExampleDecorator_set_value(self, *args)
581 def remove_attribute(self, *args):
583 remove_attribute(ExampleDecorator self, FloatKey a0)
584 remove_attribute(ExampleDecorator self, IntKey a0)
585 remove_attribute(ExampleDecorator self, StringKey a0)
586 remove_attribute(ExampleDecorator self, ParticleIndexKey a0)
587 remove_attribute(ExampleDecorator self, ObjectKey a0)
589 return _IMP_example.ExampleDecorator_remove_attribute(self, *args)
591 def has_attribute(self, *args):
593 has_attribute(ExampleDecorator self, FloatKey a0) -> bool
594 has_attribute(ExampleDecorator self, IntKey a0) -> bool
595 has_attribute(ExampleDecorator self, StringKey a0) -> bool
596 has_attribute(ExampleDecorator self, ParticleIndexKey a0) -> bool
597 has_attribute(ExampleDecorator self, ObjectKey a0) -> bool
599 return _IMP_example.ExampleDecorator_has_attribute(self, *args)
601 def get_derivative(self, *args):
602 """get_derivative(ExampleDecorator self, FloatKey a0) -> double"""
603 return _IMP_example.ExampleDecorator_get_derivative(self, *args)
606 """get_name(ExampleDecorator self) -> std::string"""
607 return _IMP_example.ExampleDecorator_get_name(self)
609 def clear_caches(self):
610 """clear_caches(ExampleDecorator self)"""
611 return _IMP_example.ExampleDecorator_clear_caches(self)
613 def set_name(self, *args):
614 """set_name(ExampleDecorator self, std::string a0)"""
615 return _IMP_example.ExampleDecorator_set_name(self, *args)
618 """set_check_level(ExampleDecorator self, IMP::base::CheckLevel a0)"""
619 return _IMP_example.ExampleDecorator_set_check_level(self, *args)
621 def add_to_derivative(self, *args):
622 """add_to_derivative(ExampleDecorator self, FloatKey a0, double a1, DerivativeAccumulator a2)"""
623 return _IMP_example.ExampleDecorator_add_to_derivative(self, *args)
625 def set_is_optimized(self, *args):
626 """set_is_optimized(ExampleDecorator self, FloatKey a0, bool a1)"""
627 return _IMP_example.ExampleDecorator_set_is_optimized(self, *args)
629 def get_is_optimized(self, *args):
630 """get_is_optimized(ExampleDecorator self, FloatKey a0) -> bool"""
631 return _IMP_example.ExampleDecorator_get_is_optimized(self, *args)
634 """get_check_level(ExampleDecorator self) -> IMP::base::CheckLevel"""
635 return _IMP_example.ExampleDecorator_get_check_level(self)
637 def __eq__(self, *args):
639 __eq__(ExampleDecorator self, ExampleDecorator o) -> bool
640 __eq__(ExampleDecorator self, Particle d) -> bool
642 return _IMP_example.ExampleDecorator___eq__(self, *args)
644 def __ne__(self, *args):
646 __ne__(ExampleDecorator self, ExampleDecorator o) -> bool
647 __ne__(ExampleDecorator self, Particle d) -> bool
649 return _IMP_example.ExampleDecorator___ne__(self, *args)
651 def __le__(self, *args):
653 __le__(ExampleDecorator self, ExampleDecorator o) -> bool
654 __le__(ExampleDecorator self, Particle d) -> bool
656 return _IMP_example.ExampleDecorator___le__(self, *args)
658 def __lt__(self, *args):
660 __lt__(ExampleDecorator self, ExampleDecorator o) -> bool
661 __lt__(ExampleDecorator self, Particle d) -> bool
663 return _IMP_example.ExampleDecorator___lt__(self, *args)
665 def __ge__(self, *args):
667 __ge__(ExampleDecorator self, ExampleDecorator o) -> bool
668 __ge__(ExampleDecorator self, Particle d) -> bool
670 return _IMP_example.ExampleDecorator___ge__(self, *args)
672 def __gt__(self, *args):
674 __gt__(ExampleDecorator self, ExampleDecorator o) -> bool
675 __gt__(ExampleDecorator self, Particle d) -> bool
677 return _IMP_example.ExampleDecorator___gt__(self, *args)
680 """__str__(ExampleDecorator self) -> std::string"""
681 return _IMP_example.ExampleDecorator___str__(self)
684 """__repr__(ExampleDecorator self) -> std::string"""
685 return _IMP_example.ExampleDecorator___repr__(self)
687 __swig_destroy__ = _IMP_example.delete_ExampleDecorator
688 __del__ =
lambda self :
None;
689 ExampleDecorator_swigregister = _IMP_example.ExampleDecorator_swigregister
690 ExampleDecorator_swigregister(ExampleDecorator)
692 def ExampleDecorator_decorate_particle(*args):
693 """ExampleDecorator_decorate_particle(Particle p) -> ExampleDecorator"""
694 return _IMP_example.ExampleDecorator_decorate_particle(*args)
696 def ExampleDecorator_particle_is_instance(*args):
698 particle_is_instance(Particle p) -> bool
699 ExampleDecorator_particle_is_instance(Model m, IMP::kernel::ParticleIndex pi) -> bool
701 return _IMP_example.ExampleDecorator_particle_is_instance(*args)
703 def ExampleDecorator_get_is_setup(*args):
705 get_is_setup(Model m, IMP::kernel::ParticleIndex pi) -> bool
706 ExampleDecorator_get_is_setup(_ParticleAdaptor p) -> bool
708 return _IMP_example.ExampleDecorator_get_is_setup(*args)
710 def ExampleDecorator_setup_particle(*args):
712 setup_particle(Model m, IMP::kernel::ParticleIndex pi, std::string name) -> ExampleDecorator
713 ExampleDecorator_setup_particle(_ParticleAdaptor decorator, std::string name) -> ExampleDecorator
715 return _IMP_example.ExampleDecorator_setup_particle(*args)
718 def __lshift__(*args):
719 """__lshift__(_ostream out, ExampleDecorator n) -> _ostream"""
720 return _IMP_example.__lshift__(*args)
722 """Proxy of C++ IMP::example::ExampleUnaryFunction class"""
723 __swig_setmethods__ = {}
725 __setattr__ =
lambda self, name, value: _swig_setattr(self, ExampleUnaryFunction, name, value)
726 __swig_getmethods__ = {}
728 __getattr__ =
lambda self, name: _swig_getattr(self, ExampleUnaryFunction, name)
729 def __init__(self, *args):
730 """__init__(IMP::example::ExampleUnaryFunction self, IMP::Float center, IMP::Float k) -> ExampleUnaryFunction"""
731 this = _IMP_example.new_ExampleUnaryFunction(*args)
732 try: self.this.append(this)
733 except: self.this = this
734 def get_version_info(self):
735 """get_version_info(ExampleUnaryFunction self) -> VersionInfo"""
736 return _IMP_example.ExampleUnaryFunction_get_version_info(self)
738 __swig_destroy__ = _IMP_example.delete_ExampleUnaryFunction
739 __del__ =
lambda self :
None;
741 """__str__(ExampleUnaryFunction self) -> std::string"""
742 return _IMP_example.ExampleUnaryFunction___str__(self)
745 """__repr__(ExampleUnaryFunction self) -> std::string"""
746 return _IMP_example.ExampleUnaryFunction___repr__(self)
749 return _object_cast_to_ExampleUnaryFunction(o)
750 get_from = staticmethod(get_from)
752 ExampleUnaryFunction_swigregister = _IMP_example.ExampleUnaryFunction_swigregister
753 ExampleUnaryFunction_swigregister(ExampleUnaryFunction)
756 """Proxy of C++ IMP::example::ExampleObject class"""
757 __swig_setmethods__ = {}
758 for _s
in [
IMP.base.Object]: __swig_setmethods__.update(getattr(_s,
'__swig_setmethods__',{}))
759 __setattr__ =
lambda self, name, value: _swig_setattr(self, ExampleObject, name, value)
760 __swig_getmethods__ = {}
761 for _s
in [
IMP.base.Object]: __swig_getmethods__.update(getattr(_s,
'__swig_getmethods__',{}))
762 __getattr__ =
lambda self, name: _swig_getattr(self, ExampleObject, name)
763 def __init__(self, *args):
764 """__init__(IMP::example::ExampleObject self, IMP::Floats const & data) -> ExampleObject"""
765 this = _IMP_example.new_ExampleObject(*args)
766 try: self.this.append(this)
767 except: self.this = this
768 def get_data(self, *args):
769 """get_data(ExampleObject self, unsigned int i) -> double"""
770 return _IMP_example.ExampleObject_get_data(self, *args)
772 def get_version_info(self):
773 """get_version_info(ExampleObject self) -> VersionInfo"""
774 return _IMP_example.ExampleObject_get_version_info(self)
776 __swig_destroy__ = _IMP_example.delete_ExampleObject
777 __del__ =
lambda self :
None;
779 """__str__(ExampleObject self) -> std::string"""
780 return _IMP_example.ExampleObject___str__(self)
783 """__repr__(ExampleObject self) -> std::string"""
784 return _IMP_example.ExampleObject___repr__(self)
787 return _object_cast_to_ExampleObject(o)
788 get_from = staticmethod(get_from)
790 ExampleObject_swigregister = _IMP_example.ExampleObject_swigregister
791 ExampleObject_swigregister(ExampleObject)
794 """Proxy of C++ IMP::example::ExampleSingletonModifier class"""
795 __swig_setmethods__ = {}
797 __setattr__ =
lambda self, name, value: _swig_setattr(self, ExampleSingletonModifier, name, value)
798 __swig_getmethods__ = {}
800 __getattr__ =
lambda self, name: _swig_getattr(self, ExampleSingletonModifier, name)
801 def __init__(self, *args):
802 """__init__(IMP::example::ExampleSingletonModifier self, BoundingBox3D bb) -> ExampleSingletonModifier"""
803 this = _IMP_example.new_ExampleSingletonModifier(*args)
804 try: self.this.append(this)
805 except: self.this = this
806 def do_get_inputs(self, *args):
807 """do_get_inputs(ExampleSingletonModifier self, Model m, IMP::kernel::ParticleIndexes const & pis) -> IMP::kernel::ModelObjectsTemp"""
808 return _IMP_example.ExampleSingletonModifier_do_get_inputs(self, *args)
810 def do_get_outputs(self, *args):
811 """do_get_outputs(ExampleSingletonModifier self, Model m, IMP::kernel::ParticleIndexes const & pis) -> IMP::kernel::ModelObjectsTemp"""
812 return _IMP_example.ExampleSingletonModifier_do_get_outputs(self, *args)
814 def get_version_info(self):
815 """get_version_info(ExampleSingletonModifier self) -> VersionInfo"""
816 return _IMP_example.ExampleSingletonModifier_get_version_info(self)
818 __swig_destroy__ = _IMP_example.delete_ExampleSingletonModifier
819 __del__ =
lambda self :
None;
821 """__str__(ExampleSingletonModifier self) -> std::string"""
822 return _IMP_example.ExampleSingletonModifier___str__(self)
825 """__repr__(ExampleSingletonModifier self) -> std::string"""
826 return _IMP_example.ExampleSingletonModifier___repr__(self)
829 return _object_cast_to_ExampleSingletonModifier(o)
830 get_from = staticmethod(get_from)
832 ExampleSingletonModifier_swigregister = _IMP_example.ExampleSingletonModifier_swigregister
833 ExampleSingletonModifier_swigregister(ExampleSingletonModifier)
836 """Proxy of C++ IMP::example::ExamplePairScore class"""
837 __swig_setmethods__ = {}
838 for _s
in [
IMP.kernel.PairScore]: __swig_setmethods__.update(getattr(_s,
'__swig_setmethods__',{}))
839 __setattr__ =
lambda self, name, value: _swig_setattr(self, ExamplePairScore, name, value)
840 __swig_getmethods__ = {}
841 for _s
in [
IMP.kernel.PairScore]: __swig_getmethods__.update(getattr(_s,
'__swig_getmethods__',{}))
842 __getattr__ =
lambda self, name: _swig_getattr(self, ExamplePairScore, name)
843 def __init__(self, *args):
844 """__init__(IMP::example::ExamplePairScore self, double x0, double k) -> ExamplePairScore"""
845 this = _IMP_example.new_ExamplePairScore(*args)
846 try: self.this.append(this)
847 except: self.this = this
848 def do_get_inputs(self, *args):
849 """do_get_inputs(ExamplePairScore self, Model m, IMP::kernel::ParticleIndexes const & pis) -> IMP::kernel::ModelObjectsTemp"""
850 return _IMP_example.ExamplePairScore_do_get_inputs(self, *args)
852 def get_version_info(self):
853 """get_version_info(ExamplePairScore self) -> VersionInfo"""
854 return _IMP_example.ExamplePairScore_get_version_info(self)
856 __swig_destroy__ = _IMP_example.delete_ExamplePairScore
857 __del__ =
lambda self :
None;
859 """__str__(ExamplePairScore self) -> std::string"""
860 return _IMP_example.ExamplePairScore___str__(self)
863 """__repr__(ExamplePairScore self) -> std::string"""
864 return _IMP_example.ExamplePairScore___repr__(self)
867 return _object_cast_to_ExamplePairScore(o)
868 get_from = staticmethod(get_from)
870 ExamplePairScore_swigregister = _IMP_example.ExamplePairScore_swigregister
871 ExamplePairScore_swigregister(ExamplePairScore)
874 """Proxy of C++ IMP::example::ExampleSubsetFilterTable class"""
875 __swig_setmethods__ = {}
877 __setattr__ =
lambda self, name, value: _swig_setattr(self, ExampleSubsetFilterTable, name, value)
878 __swig_getmethods__ = {}
880 __getattr__ =
lambda self, name: _swig_getattr(self, ExampleSubsetFilterTable, name)
881 def __init__(self, *args):
882 """__init__(IMP::example::ExampleSubsetFilterTable self, unsigned int max_diff, IMP::kernel::ParticlesTemp const & pt) -> ExampleSubsetFilterTable"""
883 this = _IMP_example.new_ExampleSubsetFilterTable(*args)
884 try: self.this.append(this)
885 except: self.this = this
886 def get_version_info(self):
887 """get_version_info(ExampleSubsetFilterTable self) -> VersionInfo"""
888 return _IMP_example.ExampleSubsetFilterTable_get_version_info(self)
890 __swig_destroy__ = _IMP_example.delete_ExampleSubsetFilterTable
891 __del__ =
lambda self :
None;
893 """__str__(ExampleSubsetFilterTable self) -> std::string"""
894 return _IMP_example.ExampleSubsetFilterTable___str__(self)
897 """__repr__(ExampleSubsetFilterTable self) -> std::string"""
898 return _IMP_example.ExampleSubsetFilterTable___repr__(self)
901 return _object_cast_to_ExampleSubsetFilterTable(o)
902 get_from = staticmethod(get_from)
904 ExampleSubsetFilterTable_swigregister = _IMP_example.ExampleSubsetFilterTable_swigregister
905 ExampleSubsetFilterTable_swigregister(ExampleSubsetFilterTable)
908 """Proxy of C++ IMP::example::ExampleConstraint class"""
909 __swig_setmethods__ = {}
911 __setattr__ =
lambda self, name, value: _swig_setattr(self, ExampleConstraint, name, value)
912 __swig_getmethods__ = {}
914 __getattr__ =
lambda self, name: _swig_getattr(self, ExampleConstraint, name)
915 def __init__(self, *args):
916 """__init__(IMP::example::ExampleConstraint self, Particle p) -> ExampleConstraint"""
917 this = _IMP_example.new_ExampleConstraint(*args)
918 try: self.this.append(this)
919 except: self.this = this
920 def do_get_inputs(self):
921 """do_get_inputs(ExampleConstraint self) -> IMP::kernel::ModelObjectsTemp"""
922 return _IMP_example.ExampleConstraint_do_get_inputs(self)
924 def do_get_outputs(self):
925 """do_get_outputs(ExampleConstraint self) -> IMP::kernel::ModelObjectsTemp"""
926 return _IMP_example.ExampleConstraint_do_get_outputs(self)
928 def get_version_info(self):
929 """get_version_info(ExampleConstraint self) -> VersionInfo"""
930 return _IMP_example.ExampleConstraint_get_version_info(self)
932 __swig_destroy__ = _IMP_example.delete_ExampleConstraint
933 __del__ =
lambda self :
None;
935 """__str__(ExampleConstraint self) -> std::string"""
936 return _IMP_example.ExampleConstraint___str__(self)
939 """__repr__(ExampleConstraint self) -> std::string"""
940 return _IMP_example.ExampleConstraint___repr__(self)
943 return _object_cast_to_ExampleConstraint(o)
944 get_from = staticmethod(get_from)
946 ExampleConstraint_swigregister = _IMP_example.ExampleConstraint_swigregister
947 ExampleConstraint_swigregister(ExampleConstraint)
951 """create_serial_mover(IMP::kernel::ParticlesTemp const & ps) -> MonteCarloMover"""
952 return _IMP_example.create_serial_mover(*args)
956 optimize_balls(IMP::kernel::ParticlesTemp const & ps, IMP::kernel::RestraintsTemp const & rs=IMP::kernel::RestraintsTemp(),
957 IMP::kernel::PairPredicates const & excluded=IMP::kernel::PairPredicates(),
958 IMP::kernel::OptimizerStates const & opt_states=IMP::kernel::OptimizerStates(),
959 IMP::base::LogLevel ll=DEFAULT)
960 optimize_balls(IMP::kernel::ParticlesTemp const & ps, IMP::kernel::RestraintsTemp const & rs=IMP::kernel::RestraintsTemp(),
961 IMP::kernel::PairPredicates const & excluded=IMP::kernel::PairPredicates(),
962 IMP::kernel::OptimizerStates const & opt_states=IMP::kernel::OptimizerStates())
963 optimize_balls(IMP::kernel::ParticlesTemp const & ps, IMP::kernel::RestraintsTemp const & rs=IMP::kernel::RestraintsTemp(),
964 IMP::kernel::PairPredicates const & excluded=IMP::kernel::PairPredicates())
965 optimize_balls(IMP::kernel::ParticlesTemp const & ps, IMP::kernel::RestraintsTemp const & rs=IMP::kernel::RestraintsTemp())
966 optimize_balls(IMP::kernel::ParticlesTemp const & ps)
968 return _IMP_example.optimize_balls(*args)
972 optimize_assembly(Model m, IMP::kernel::ParticlesTemp const & components, IMP::kernel::RestraintsTemp const & interactions,
973 IMP::kernel::RestraintsTemp const & other_restraints,
974 BoundingBox3D bb, PairScore ev, double cutoff, IMP::kernel::PairPredicates const & excluded=IMP::kernel::PairPredicates())
975 optimize_assembly(Model m, IMP::kernel::ParticlesTemp const & components, IMP::kernel::RestraintsTemp const & interactions,
976 IMP::kernel::RestraintsTemp const & other_restraints,
977 BoundingBox3D bb, PairScore ev, double cutoff)
979 return _IMP_example.optimize_assembly(*args)
982 """get_number_of_incidences(IMP::kernel::ParticlesTemp const & psa, IMP::kernel::ParticlesTemp const & psb, double point_distance) -> unsigned int"""
983 return _IMP_example.get_number_of_incidences(*args)
986 """create_chain_restraint(IMP::kernel::ParticlesTemp const & ps, double length_factor, double k, std::string name) -> Restraint"""
987 return _IMP_example.create_chain_restraint(*args)
990 """create_excluded_volume(IMP::kernel::ParticlesTemp const & ps, double k, std::string name) -> ClosePairContainer"""
991 return _IMP_example.create_excluded_volume(*args)
992 class ExampleTemplateClass3D(_object):
993 """Proxy of C++ IMP::example::ExampleTemplateClassD<(3)> class"""
994 __swig_setmethods__ = {}
995 __setattr__ =
lambda self, name, value: _swig_setattr(self, ExampleTemplateClass3D, name, value)
996 __swig_getmethods__ = {}
997 __getattr__ =
lambda self, name: _swig_getattr(self, ExampleTemplateClass3D, name)
998 def __init__(self, *args):
1000 __init__(IMP::example::ExampleTemplateClassD<(3)> self) -> ExampleTemplateClass3D
1001 __init__(IMP::example::ExampleTemplateClassD<(3)> self, Vector3D a, Vector3D b) -> ExampleTemplateClass3D
1003 this = _IMP_example.new_ExampleTemplateClass3D(*args)
1004 try: self.this.append(this)
1005 except: self.this = this
1006 def get_point(self, *args):
1007 """get_point(ExampleTemplateClass3D self, unsigned int i) -> Vector3D"""
1008 return _IMP_example.ExampleTemplateClass3D_get_point(self, *args)
1010 def show(self, *args):
1012 show(ExampleTemplateClass3D self, _ostream out=std::cout)
1013 show(ExampleTemplateClass3D self)
1015 return _IMP_example.ExampleTemplateClass3D_show(self, *args)
1018 """__str__(ExampleTemplateClass3D self) -> std::string"""
1019 return _IMP_example.ExampleTemplateClass3D___str__(self)
1022 """__repr__(ExampleTemplateClass3D self) -> std::string"""
1023 return _IMP_example.ExampleTemplateClass3D___repr__(self)
1025 __swig_destroy__ = _IMP_example.delete_ExampleTemplateClass3D
1026 __del__ =
lambda self :
None;
1027 ExampleTemplateClass3D_swigregister = _IMP_example.ExampleTemplateClass3D_swigregister
1028 ExampleTemplateClass3D_swigregister(ExampleTemplateClass3D)
1030 from _randomize
import *
1033 def get_module_version():
1034 """get_module_version() -> std::string const"""
1035 return _IMP_example.get_module_version()
1038 """get_example_path(std::string fname) -> std::string"""
1039 return _IMP_example.get_example_path(*args)
1042 """get_data_path(std::string fname) -> std::string"""
1043 return _IMP_example.get_data_path(*args)
1044 import _version_check
1045 _version_check.check_version(get_module_version())
See IMP.container for more information.
void optimize_assembly(kernel::Model *m, const kernel::ParticlesTemp &components, const kernel::RestraintsTemp &interactions, const kernel::RestraintsTemp &other_restraints, const algebra::BoundingBox3D &bb, PairScore *ev, double cutoff, const PairPredicates &excluded=PairPredicates())
See IMP.cgal for more information.
void set_check_level(CheckLevel tf)
Control runtime checks in the code.
See IMP.base for more information.
std::string get_data_path(std::string file_name)
Return the full path to installed data.
void optimize_balls(const kernel::ParticlesTemp &ps, const kernel::RestraintsTemp &rs=kernel::RestraintsTemp(), const PairPredicates &excluded=PairPredicates(), const OptimizerStates &opt_states=OptimizerStates(), base::LogLevel ll=base::DEFAULT)
Abstract single variable functor class for score functions.
See IMP.score_functor for more information.
Vector3D get_random_vector_in(const Cylinder3D &c)
Generate a random vector in a cylinder with uniform density.
A base class for modifiers of ParticlesTemp.
See IMP.statistics for more information.
kernel::Restraint * create_chain_restraint(const kernel::ParticlesTemp &ps, double length_factor, double k, std::string name)
unsigned int get_number_of_incidences(const kernel::ParticlesTemp &psa, const kernel::ParticlesTemp &psb, double point_distance)
static XYZR setup_particle(kernel::Model *m, ParticleIndex pi)
See IMP.kernel for more information.
A restraint is a term in an IMP ScoringFunction.
Class to handle individual model particles.
Common base class for heavy weight IMP objects.
std::string get_example_path(std::string file_name)
Return the path to installed example data for this module.
container::ClosePairContainer * create_excluded_volume(const kernel::ParticlesTemp &ps, double k, std::string name)
See IMP.core for more information.
See IMP.algebra for more information.
void show(Hierarchy h, std::ostream &out=std::cout)
Print out a molecular hierarchy.
core::MonteCarloMover * create_serial_mover(const kernel::ParticlesTemp &ps)
Implement a constraint on the Model.
See IMP.display for more information.
CheckLevel get_check_level()
Get the current audit mode.
See IMP.atom for more information.
See IMP.rmf for more information.
See IMP.domino for more information.
Class for storing model, its restraints, constraints, and particles.