IMP  2.0.1
The Integrative Modeling Platform
isd Directory Reference
+ Directory dependency graph for isd:

Files

file  AmbiguousNOERestraint.h [code]
 A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
 
file  AmbiguousRestraint.h [code]
 An implementation of the d-norm to make an ambiguous restraint.
 
file  bivariate_functions.h [code]
 Classes for general functions.
 
file  FNormal.h [code]
 Normal distribution of Function.
 
file  GaussianProcessInterpolation.h [code]
 Normal distribution of Function.
 
file  GaussianProcessInterpolationRestraint.h [code]
 Restraint and ScoreState for GaussianProcessInterpolation.
 
file  GaussianProcessInterpolationRestraintSparse.h [code]
 Normal distribution of Function.
 
file  GaussianProcessInterpolationSparse.h [code]
 Normal distribution of Function.
 
file  GaussianRestraint.h [code]
 A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
 
file  HybridMonteCarlo.h [code]
 A hybrid monte carlo implementation.
 
file  isd_config.h [code]
 
file  ISDRestraint.h [code]
 A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
 
file  JeffreysRestraint.h [code]
 A restraint on a scale parameter.
 
file  LogicalORRestraint.h [code]
 A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
 
file  LognormalRestraint.h [code]
 A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
 
file  MaintainScaleOrderConstraint.h [code]
 Constrain scales to be ordered and positive.
 
file  MarginalHBondRestraint.h [code]
 A lognormal restraint that uses the ISPA model to model HBond-derived distance fit.
 
file  MarginalNOERestraint.h [code]
 A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
 
file  isd/MolecularDynamics.h [code]
 Simple molecular dynamics optimizer.
 
file  MolecularDynamicsMover.h [code]
 A modifier which perturbs XYZs or Nuisances with a constant energy MD simulation.
 
file  MultivariateFNormalSufficient.h [code]
 Normal distribution of Function.
 
file  MultivariateFNormalSufficientSparse.h [code]
 Normal distribution of Function.
 
file  NOERestraint.h [code]
 A lognormal restraint that uses the ISPA model to model NOE-derived distance fit.
 
file  Nuisance.h [code]
 A decorator for nuisance parameters particles.
 
file  NuisanceRangeModifier.h [code]
 A singleton modifier which wraps an attribute into a given range.
 
file  RepulsiveDistancePairScore.h [code]
 A simple quadric repulsive term between two atoms. Restraint is zero when the distance equals the sum of the radii plus the shift.
 
file  Scale.h [code]
 A decorator for scale parameters particles.
 
file  SlidingPriorRestraint.h [code]
 A restraint on a scale parameter.
 
file  Switching.h [code]
 A decorator for switching parameters particles.
 
file  TALOSRestraint.h [code]
 TALOS dihedral restraint between four particles.
 
file  univariate_functions.h [code]
 Classes for general functions.
 
file  vonMises.h [code]
 Normal distribution of Function.
 
file  vonMisesKappaConjugateRestraint.h [code]
 Conjugate prior for \(\kappa\) in the von Mises distribution.
 
file  vonMisesKappaJeffreysRestraint.h [code]
 Jeffreys prior for \(\kappa\) in the von Mises distribution.
 
file  vonMisesSufficient.h [code]
 Normal distribution of Function.