IMP  2.0.1
The Integrative Modeling Platform
example/range_restriction.py

This example shows how to use the example singleton modifier to constrain the coordinates of a set of particles to remain within a box.

1 ## \example example/range_restriction.py
2 ## This example shows how to use the example singleton modifier to constrain the
3 ## coordinates of a set of particles to remain within a box.
4 
5 import IMP.example
6 import IMP.core
7 import IMP.container
8 import sys
9 
10 # you can use this argument to shorten the test, if necessary
11 IMP.base.add_bool_flag("test", "Run a minimal test on the script")
12 
13 # parse standard IMP flags
14 IMP.base.setup_from_argv(sys.argv, "A trivial example of an example.")
15 
16 
18  IMP.algebra.Vector3D(10,10,10))
19 
20 m= IMP.Model()
23 
24 # apply the range restriction modifier to each each particle in sc
26 m.add_score_state(ss)
27 
28 # now optimize and things
29 # ...