restrainer/__init__.py

# This file was automatically generated by SWIG (http://www.swig.org).
# Version 2.0.8
#
# Do not make changes to this file unless you know what you are doing--modify
# the SWIG interface file instead.



from sys import version_info
if version_info >= (2,6,0):
    def swig_import_helper():
        from os.path import dirname
        import imp
        fp = None
        try:
            fp, pathname, description = imp.find_module('_IMP_restrainer', [dirname(__file__)])
        except ImportError:
            import _IMP_restrainer
            return _IMP_restrainer
        if fp is not None:
            try:
                _mod = imp.load_module('_IMP_restrainer', fp, pathname, description)
            finally:
                fp.close()
            return _mod
    _IMP_restrainer = swig_import_helper()
    del swig_import_helper
else:
    import _IMP_restrainer
del version_info
try:
    _swig_property = property
except NameError:
    pass # Python < 2.2 doesn't have 'property'.
def _swig_setattr_nondynamic(self,class_type,name,value,static=1):
    if (name == "thisown"): return self.this.own(value)
    if (name == "this"):
        if type(value).__name__ == 'SwigPyObject':
            self.__dict__[name] = value
            return
    method = class_type.__swig_setmethods__.get(name,None)
    if method: return method(self,value)
    if (not static):
        self.__dict__[name] = value
    else:
        raise AttributeError("You cannot add attributes to %s" % self)

def _swig_setattr(self,class_type,name,value):
    return _swig_setattr_nondynamic(self,class_type,name,value,0)

def _swig_getattr(self,class_type,name):
    if (name == "thisown"): return self.this.own()
    method = class_type.__swig_getmethods__.get(name,None)
    if method: return method(self)
    raise AttributeError(name)

def _swig_repr(self):
    try: strthis = "proxy of " + self.this.__repr__()
    except: strthis = ""
    return "<%s.%s; %s >" % (self.__class__.__module__, self.__class__.__name__, strthis,)

try:
    _object = object
    _newclass = 1
except AttributeError:
    class _object : pass
    _newclass = 0


try:
    import weakref
    weakref_proxy = weakref.proxy
except:
    weakref_proxy = lambda x: x


class IMP_RESTRAINER_SwigPyIterator(_object):
    """Proxy of C++ swig::IMP_RESTRAINER_SwigPyIterator class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, IMP_RESTRAINER_SwigPyIterator, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, IMP_RESTRAINER_SwigPyIterator, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined - class is abstract")
    __repr__ = _swig_repr
    __swig_destroy__ = _IMP_restrainer.delete_IMP_RESTRAINER_SwigPyIterator
    __del__ = lambda self : None;
    def value(self):
        """value(IMP_RESTRAINER_SwigPyIterator self) -> PyObject *"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_value(self)

    def incr(self, n=1):
        """
        incr(IMP_RESTRAINER_SwigPyIterator self, size_t n=1) -> IMP_RESTRAINER_SwigPyIterator
        incr(IMP_RESTRAINER_SwigPyIterator self) -> IMP_RESTRAINER_SwigPyIterator
        """
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_incr(self, n)

    def decr(self, n=1):
        """
        decr(IMP_RESTRAINER_SwigPyIterator self, size_t n=1) -> IMP_RESTRAINER_SwigPyIterator
        decr(IMP_RESTRAINER_SwigPyIterator self) -> IMP_RESTRAINER_SwigPyIterator
        """
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_decr(self, n)

    def distance(self, *args):
        """distance(IMP_RESTRAINER_SwigPyIterator self, IMP_RESTRAINER_SwigPyIterator x) -> ptrdiff_t"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_distance(self, *args)

    def equal(self, *args):
        """equal(IMP_RESTRAINER_SwigPyIterator self, IMP_RESTRAINER_SwigPyIterator x) -> bool"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_equal(self, *args)

    def copy(self):
        """copy(IMP_RESTRAINER_SwigPyIterator self) -> IMP_RESTRAINER_SwigPyIterator"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_copy(self)

    def next(self):
        """next(IMP_RESTRAINER_SwigPyIterator self) -> PyObject *"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_next(self)

    def __next__(self):
        """__next__(IMP_RESTRAINER_SwigPyIterator self) -> PyObject *"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator___next__(self)

    def previous(self):
        """previous(IMP_RESTRAINER_SwigPyIterator self) -> PyObject *"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_previous(self)

    def advance(self, *args):
        """advance(IMP_RESTRAINER_SwigPyIterator self, ptrdiff_t n) -> IMP_RESTRAINER_SwigPyIterator"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_advance(self, *args)

    def __eq__(self, *args):
        """__eq__(IMP_RESTRAINER_SwigPyIterator self, IMP_RESTRAINER_SwigPyIterator x) -> bool"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator___eq__(self, *args)

    def __ne__(self, *args):
        """__ne__(IMP_RESTRAINER_SwigPyIterator self, IMP_RESTRAINER_SwigPyIterator x) -> bool"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator___ne__(self, *args)

    def __iadd__(self, *args):
        """__iadd__(IMP_RESTRAINER_SwigPyIterator self, ptrdiff_t n) -> IMP_RESTRAINER_SwigPyIterator"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator___iadd__(self, *args)

    def __isub__(self, *args):
        """__isub__(IMP_RESTRAINER_SwigPyIterator self, ptrdiff_t n) -> IMP_RESTRAINER_SwigPyIterator"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator___isub__(self, *args)

    def __add__(self, *args):
        """__add__(IMP_RESTRAINER_SwigPyIterator self, ptrdiff_t n) -> IMP_RESTRAINER_SwigPyIterator"""
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator___add__(self, *args)

    def __sub__(self, *args):
        """
        __sub__(IMP_RESTRAINER_SwigPyIterator self, ptrdiff_t n) -> IMP_RESTRAINER_SwigPyIterator
        __sub__(IMP_RESTRAINER_SwigPyIterator self, IMP_RESTRAINER_SwigPyIterator x) -> ptrdiff_t
        """
        return _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator___sub__(self, *args)

    def __iter__(self): return self
IMP_RESTRAINER_SwigPyIterator_swigregister = _IMP_restrainer.IMP_RESTRAINER_SwigPyIterator_swigregister
IMP_RESTRAINER_SwigPyIterator_swigregister(IMP_RESTRAINER_SwigPyIterator)

_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]

IMP_HAS_DEPRECATED = _IMP_restrainer.IMP_HAS_DEPRECATED
IMP_DEBUG = _IMP_restrainer.IMP_DEBUG
IMP_RELEASE = _IMP_restrainer.IMP_RELEASE
IMP_SILENT = _IMP_restrainer.IMP_SILENT
IMP_PROGRESS = _IMP_restrainer.IMP_PROGRESS
IMP_TERSE = _IMP_restrainer.IMP_TERSE
IMP_VERBOSE = _IMP_restrainer.IMP_VERBOSE
IMP_NONE = _IMP_restrainer.IMP_NONE
IMP_USAGE = _IMP_restrainer.IMP_USAGE
IMP_INTERNAL = _IMP_restrainer.IMP_INTERNAL
IMP_COMPILER_HAS_AUTO = _IMP_restrainer.IMP_COMPILER_HAS_AUTO
IMP_COMPILER_HAS_DEBUG_VECTOR = _IMP_restrainer.IMP_COMPILER_HAS_DEBUG_VECTOR
IMP_COMPILER_HAS_NULLPTR = _IMP_restrainer.IMP_COMPILER_HAS_NULLPTR
IMP_BASE_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_BASE_HAS_BOOST_RANDOM
IMP_BASE_HAS_GPERFTOOLS = _IMP_restrainer.IMP_BASE_HAS_GPERFTOOLS
IMP_BASE_HAS_LOG4CXX = _IMP_restrainer.IMP_BASE_HAS_LOG4CXX
IMP_BASE_HAS_TCMALLOC_HEAPCHECKER = _IMP_restrainer.IMP_BASE_HAS_TCMALLOC_HEAPCHECKER
IMP_BASE_HAS_TCMALLOC_HEAPPROFILER = _IMP_restrainer.IMP_BASE_HAS_TCMALLOC_HEAPPROFILER
import sys
class _DirectorObjects(object):
    """@internal Simple class to keep references to director objects
       to prevent premature deletion."""
    def __init__(self):
        self._objects = []
    def register(self, obj):
        """Take a reference to a director object; will only work for
           refcounted C++ classes"""
        if hasattr(obj, 'get_ref_count'):
            self._objects.append(obj)
    def cleanup(self):
        """Only drop our reference and allow cleanup by Python if no other
           Python references exist (we hold 3 references: one in self._objects,
           one in x, and one in the argument list for getrefcount) *and* no
           other C++ references exist (the Python object always holds one)"""
        objs = [x for x in self._objects if sys.getrefcount(x) > 3 \
                                         or x.get_ref_count() > 1]
        
        
        self._objects = objs
    def get_object_count(self):
        """Get number of director objects (useful for testing only)"""
        return len(self._objects)
_director_objects = _DirectorObjects()

DEFAULT_CHECK = _IMP_restrainer.DEFAULT_CHECK
NONE = _IMP_restrainer.NONE
USAGE = _IMP_restrainer.USAGE
USAGE_AND_INTERNAL = _IMP_restrainer.USAGE_AND_INTERNAL

def set_check_level(*args):
  """set_check_level(IMP::base::CheckLevel tf)"""
  return _IMP_restrainer.set_check_level(*args)

def get_check_level():
  """get_check_level() -> IMP::base::CheckLevel"""
  return _IMP_restrainer.get_check_level()
class _ostream(_object):
    """Proxy of C++ std::ostream class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, _ostream, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, _ostream, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
    __repr__ = _swig_repr
    def write(self, *args):
        """write(_ostream self, char const * osa_buf)"""
        return _IMP_restrainer._ostream_write(self, *args)

_ostream_swigregister = _IMP_restrainer._ostream_swigregister
_ostream_swigregister(_ostream)

IMP_COMPILER_HAS_OVERRIDE = _IMP_restrainer.IMP_COMPILER_HAS_OVERRIDE
IMP_COMPILER_HAS_FINAL = _IMP_restrainer.IMP_COMPILER_HAS_FINAL
import IMP.base
IMP_CGAL_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_CGAL_HAS_BOOST_FILESYSTEM
IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_CGAL_HAS_BOOST_PROGRAMOPTIONS
IMP_CGAL_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_CGAL_HAS_BOOST_RANDOM
IMP_CGAL_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_CGAL_HAS_BOOST_SYSTEM
import IMP.cgal
IMP_ALGEBRA_HAS_IMP_CGAL = _IMP_restrainer.IMP_ALGEBRA_HAS_IMP_CGAL
IMP_ALGEBRA_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_ALGEBRA_HAS_BOOST_FILESYSTEM
IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_ALGEBRA_HAS_BOOST_PROGRAMOPTIONS
IMP_ALGEBRA_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_ALGEBRA_HAS_BOOST_RANDOM
IMP_ALGEBRA_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_ALGEBRA_HAS_BOOST_SYSTEM
IMP_ALGEBRA_HAS_CGAL = _IMP_restrainer.IMP_ALGEBRA_HAS_CGAL
IMP_ALGEBRA_HAS_ANN = _IMP_restrainer.IMP_ALGEBRA_HAS_ANN
import IMP.algebra
IMP_KERNEL_HAS_IMP_CGAL = _IMP_restrainer.IMP_KERNEL_HAS_IMP_CGAL
IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_KERNEL_HAS_BOOST_PROGRAMOPTIONS
IMP_KERNEL_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_KERNEL_HAS_BOOST_RANDOM
IMP_KERNEL_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_KERNEL_HAS_BOOST_SYSTEM
IMP_KERNEL_HAS_CGAL = _IMP_restrainer.IMP_KERNEL_HAS_CGAL
import IMP.kernel
IMP_DISPLAY_HAS_IMP_BASE = _IMP_restrainer.IMP_DISPLAY_HAS_IMP_BASE
IMP_DISPLAY_HAS_IMP_CGAL = _IMP_restrainer.IMP_DISPLAY_HAS_IMP_CGAL
IMP_DISPLAY_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_DISPLAY_HAS_BOOST_FILESYSTEM
IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_DISPLAY_HAS_BOOST_PROGRAMOPTIONS
IMP_DISPLAY_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_DISPLAY_HAS_BOOST_RANDOM
IMP_DISPLAY_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_DISPLAY_HAS_BOOST_SYSTEM
IMP_DISPLAY_HAS_CGAL = _IMP_restrainer.IMP_DISPLAY_HAS_CGAL
import IMP.display
IMP_SCORE_FUNCTOR_HAS_IMP_CGAL = _IMP_restrainer.IMP_SCORE_FUNCTOR_HAS_IMP_CGAL
IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_SCORE_FUNCTOR_HAS_BOOST_FILESYSTEM
IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_SCORE_FUNCTOR_HAS_BOOST_PROGRAMOPTIONS
IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_SCORE_FUNCTOR_HAS_BOOST_RANDOM
IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_SCORE_FUNCTOR_HAS_BOOST_SYSTEM
IMP_SCORE_FUNCTOR_HAS_CGAL = _IMP_restrainer.IMP_SCORE_FUNCTOR_HAS_CGAL
import IMP.score_functor
IMP_STATISTICS_HAS_IMP_BASE = _IMP_restrainer.IMP_STATISTICS_HAS_IMP_BASE
IMP_STATISTICS_HAS_IMP_CGAL = _IMP_restrainer.IMP_STATISTICS_HAS_IMP_CGAL
IMP_STATISTICS_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_STATISTICS_HAS_BOOST_FILESYSTEM
IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_STATISTICS_HAS_BOOST_PROGRAMOPTIONS
IMP_STATISTICS_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_STATISTICS_HAS_BOOST_RANDOM
IMP_STATISTICS_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_STATISTICS_HAS_BOOST_SYSTEM
IMP_STATISTICS_HAS_CGAL = _IMP_restrainer.IMP_STATISTICS_HAS_CGAL
import IMP.statistics
IMP_CORE_HAS_IMP_BASE = _IMP_restrainer.IMP_CORE_HAS_IMP_BASE
IMP_CORE_HAS_IMP_CGAL = _IMP_restrainer.IMP_CORE_HAS_IMP_CGAL
IMP_CORE_HAS_IMP_KERNEL = _IMP_restrainer.IMP_CORE_HAS_IMP_KERNEL
IMP_CORE_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_CORE_HAS_BOOST_FILESYSTEM
IMP_CORE_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_CORE_HAS_BOOST_PROGRAMOPTIONS
IMP_CORE_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_CORE_HAS_BOOST_RANDOM
IMP_CORE_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_CORE_HAS_BOOST_SYSTEM
IMP_CORE_HAS_CGAL = _IMP_restrainer.IMP_CORE_HAS_CGAL
import IMP.core
IMP_CONTAINER_HAS_IMP_ALGEBRA = _IMP_restrainer.IMP_CONTAINER_HAS_IMP_ALGEBRA
IMP_CONTAINER_HAS_IMP_BASE = _IMP_restrainer.IMP_CONTAINER_HAS_IMP_BASE
IMP_CONTAINER_HAS_IMP_CGAL = _IMP_restrainer.IMP_CONTAINER_HAS_IMP_CGAL
IMP_CONTAINER_HAS_IMP_DISPLAY = _IMP_restrainer.IMP_CONTAINER_HAS_IMP_DISPLAY
IMP_CONTAINER_HAS_IMP_KERNEL = _IMP_restrainer.IMP_CONTAINER_HAS_IMP_KERNEL
IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_restrainer.IMP_CONTAINER_HAS_IMP_SCORE_FUNCTOR
IMP_CONTAINER_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_CONTAINER_HAS_BOOST_FILESYSTEM
IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_CONTAINER_HAS_BOOST_PROGRAMOPTIONS
IMP_CONTAINER_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_CONTAINER_HAS_BOOST_RANDOM
IMP_CONTAINER_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_CONTAINER_HAS_BOOST_SYSTEM
IMP_CONTAINER_HAS_CGAL = _IMP_restrainer.IMP_CONTAINER_HAS_CGAL
import IMP.container
IMP_ATOM_HAS_IMP_BASE = _IMP_restrainer.IMP_ATOM_HAS_IMP_BASE
IMP_ATOM_HAS_IMP_CGAL = _IMP_restrainer.IMP_ATOM_HAS_IMP_CGAL
IMP_ATOM_HAS_IMP_KERNEL = _IMP_restrainer.IMP_ATOM_HAS_IMP_KERNEL
IMP_ATOM_HAS_IMP_SCORE_FUNCTOR = _IMP_restrainer.IMP_ATOM_HAS_IMP_SCORE_FUNCTOR
IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_ATOM_HAS_BOOST_PROGRAMOPTIONS
IMP_ATOM_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_ATOM_HAS_BOOST_RANDOM
IMP_ATOM_HAS_BOOST_REGEX = _IMP_restrainer.IMP_ATOM_HAS_BOOST_REGEX
IMP_ATOM_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_ATOM_HAS_BOOST_SYSTEM
IMP_ATOM_HAS_CGAL = _IMP_restrainer.IMP_ATOM_HAS_CGAL
IMP_ATOM_TYPE_INDEX = _IMP_restrainer.IMP_ATOM_TYPE_INDEX
IMP_RESIDUE_TYPE_INDEX = _IMP_restrainer.IMP_RESIDUE_TYPE_INDEX
IMP_HIERARCHY_TYPE_INDEX = _IMP_restrainer.IMP_HIERARCHY_TYPE_INDEX
import IMP.atom
IMP_EM_HAS_IMP_CGAL = _IMP_restrainer.IMP_EM_HAS_IMP_CGAL
IMP_EM_HAS_IMP_CONTAINER = _IMP_restrainer.IMP_EM_HAS_IMP_CONTAINER
IMP_EM_HAS_IMP_DISPLAY = _IMP_restrainer.IMP_EM_HAS_IMP_DISPLAY
IMP_EM_HAS_IMP_KERNEL = _IMP_restrainer.IMP_EM_HAS_IMP_KERNEL
IMP_EM_HAS_IMP_SCORE_FUNCTOR = _IMP_restrainer.IMP_EM_HAS_IMP_SCORE_FUNCTOR
IMP_EM_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_EM_HAS_BOOST_FILESYSTEM
IMP_EM_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_EM_HAS_BOOST_PROGRAMOPTIONS
IMP_EM_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_EM_HAS_BOOST_RANDOM
IMP_EM_HAS_BOOST_REGEX = _IMP_restrainer.IMP_EM_HAS_BOOST_REGEX
IMP_EM_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_EM_HAS_BOOST_SYSTEM
IMP_EM_HAS_CGAL = _IMP_restrainer.IMP_EM_HAS_CGAL
import IMP.em
IMP_SAXS_HAS_IMP_BASE = _IMP_restrainer.IMP_SAXS_HAS_IMP_BASE
IMP_SAXS_HAS_IMP_CGAL = _IMP_restrainer.IMP_SAXS_HAS_IMP_CGAL
IMP_SAXS_HAS_IMP_CONTAINER = _IMP_restrainer.IMP_SAXS_HAS_IMP_CONTAINER
IMP_SAXS_HAS_IMP_DISPLAY = _IMP_restrainer.IMP_SAXS_HAS_IMP_DISPLAY
IMP_SAXS_HAS_IMP_KERNEL = _IMP_restrainer.IMP_SAXS_HAS_IMP_KERNEL
IMP_SAXS_HAS_IMP_SCORE_FUNCTOR = _IMP_restrainer.IMP_SAXS_HAS_IMP_SCORE_FUNCTOR
IMP_SAXS_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_SAXS_HAS_BOOST_FILESYSTEM
IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_SAXS_HAS_BOOST_PROGRAMOPTIONS
IMP_SAXS_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_SAXS_HAS_BOOST_RANDOM
IMP_SAXS_HAS_BOOST_REGEX = _IMP_restrainer.IMP_SAXS_HAS_BOOST_REGEX
IMP_SAXS_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_SAXS_HAS_BOOST_SYSTEM
IMP_SAXS_HAS_CGAL = _IMP_restrainer.IMP_SAXS_HAS_CGAL
import IMP.saxs
IMP_RESTRAINER_HAS_IMP_ALGEBRA = _IMP_restrainer.IMP_RESTRAINER_HAS_IMP_ALGEBRA
IMP_RESTRAINER_HAS_IMP_BASE = _IMP_restrainer.IMP_RESTRAINER_HAS_IMP_BASE
IMP_RESTRAINER_HAS_IMP_CGAL = _IMP_restrainer.IMP_RESTRAINER_HAS_IMP_CGAL
IMP_RESTRAINER_HAS_IMP_CONTAINER = _IMP_restrainer.IMP_RESTRAINER_HAS_IMP_CONTAINER
IMP_RESTRAINER_HAS_IMP_DISPLAY = _IMP_restrainer.IMP_RESTRAINER_HAS_IMP_DISPLAY
IMP_RESTRAINER_HAS_IMP_KERNEL = _IMP_restrainer.IMP_RESTRAINER_HAS_IMP_KERNEL
IMP_RESTRAINER_HAS_IMP_SCORE_FUNCTOR = _IMP_restrainer.IMP_RESTRAINER_HAS_IMP_SCORE_FUNCTOR
IMP_RESTRAINER_HAS_IMP_STATISTICS = _IMP_restrainer.IMP_RESTRAINER_HAS_IMP_STATISTICS
IMP_RESTRAINER_HAS_BOOST_FILESYSTEM = _IMP_restrainer.IMP_RESTRAINER_HAS_BOOST_FILESYSTEM
IMP_RESTRAINER_HAS_BOOST_PROGRAMOPTIONS = _IMP_restrainer.IMP_RESTRAINER_HAS_BOOST_PROGRAMOPTIONS
IMP_RESTRAINER_HAS_BOOST_RANDOM = _IMP_restrainer.IMP_RESTRAINER_HAS_BOOST_RANDOM
IMP_RESTRAINER_HAS_BOOST_REGEX = _IMP_restrainer.IMP_RESTRAINER_HAS_BOOST_REGEX
IMP_RESTRAINER_HAS_BOOST_SYSTEM = _IMP_restrainer.IMP_RESTRAINER_HAS_BOOST_SYSTEM
IMP_RESTRAINER_HAS_CGAL = _IMP_restrainer.IMP_RESTRAINER_HAS_CGAL
SimpleConnectivities=list
_plural_types.append("SimpleConnectivities")
_value_types.append("SimpleConnectivity")

SimpleDistances=list
_plural_types.append("SimpleDistances")
_value_types.append("SimpleDistance")

SimpleDiameters=list
_plural_types.append("SimpleDiameters")
_value_types.append("SimpleDiameter")

SimpleExcludedVolumes=list
_plural_types.append("SimpleExcludedVolumes")
_value_types.append("SimpleExcludedVolume")

SimpleEMFits=list
_plural_types.append("SimpleEMFits")
_value_types.append("SimpleEMFit")

import _representation
import _restraint
import _xml_parser
import _display
import _optimization
import _main

class Representation(_representation.Representation):
    """Store Representation."""
    def __init__(self):
        _representation.Representation.__init__(self)
    def get_imp_hierarchy_by_id(self, id):
        """Return an IMP::atom::Hierarchy by particle id.
           @param id Particle id.
           @return An IMP::atom::Hierarchy hierarchy."""
        return _representation.Representation.get_imp_hierarchy_by_id(self,id)

    def get_root_imp_hierarchy(self):
        """Return the root of the IMP::atom::Hierarchy"""
        return _representation.Representation.get_root_imp_hierarchy(self)

    def find_all_by_id(self, id): # assuming there are many obj with the same id
        """Return a list of all nodes that have the id given by the parameter"""
        return _representation.Representation.gind_all_by_id(self, id)

    def find_by_id(self, id): # assuming there is just one obj with the same id
        """Return a node that have the id given by the parameter"""
        return _representation.Representation.find_by_id(self,id)

    def get_model(self, model=None):
        """Return an IMP::Model that contains the representation"""
        return _representation.Representation.get_model(self, model)

class Restraint(_restraint.Restraint):
    """Store Restraint"""
    def __init__(self):
        """"""
        _restraint.Restraint.__init__(self)

    def add_to_representation(self, repr):
        """ Place restraint into IMP Model."""
        return _restraint.Restraint.add_to_representation(self, repr)

    def show_all_restraints(self):
        """Show restraint name, initial weight, and score for the current state of the model"""
        return _restraint.Restraint.show_all_restraints(self)


    def get_all_restraints_by_name(self, name):
        """Assuming there are many restraint objects with the same name.
           @param[in] name The name to search for"""
        return _restraint.Restraint.get_all_restraints_by_name(self,name)

    def get_restraint_by_name(self, name):
        """Assuming there is just one restraint object with the same name."""
        return restraint.Restraint.get_restraint_by_name(self,name)

    def get_rigid_body_by_id(self, id):
        """Get rigid body by particle id."""
        return _restraint.Restraint.get_rigid_body_by_id(self,id)


    def get_all_rigid_bodies(self):
        """Get all rigid bodies."""
        return _restraint.Restraint.get_all_rigid_bodies(self)

class XMLRepresentation(_xml_parser.XMLRepresentation):
    """Construct Representation from XML file"""
    def __init__(self, filename):
        _xml_parser.XMLRepresentation.__init__(self, filename)
    def run(self):
        """Return IMP.restrainer.Representation
           object such that each node in the representation
           corresponds to the node in the XML nodes"""
        return _xml_parser.XMLRepresentation.run(self)

class XMLDisplay(_xml_parser.XMLDisplay):
    """Construct Display from XML file"""
    def __init__(self, filename):
       _xml_parser.XMLDisplay.__init__(self, filename)

    def run(self):
        """Return display object such that each node in the display
           corresponds to the node in the XML nodes"""
        return _xml_parser.XMLDisplay.run(self)

class XMLRestraint(_xml_parser.XMLRestraint):
    """Construct Restraint from XML file"""
    def __init__(self, filename):
        """ @param[in] filename the name of the file to read """
        _xml_parser.XMLRestraint.__init__(self, filename)
    def run(self):
        """Return
           <a href="classIMP_1_1restrainer_1_1restraint_1_1Restraint.html">
           Restraint</a>
           object such that each node in the restraint
           corresponds to the node in the XML nodes"""
        return _xml_parser.XMLRestraint.run(self)

class XMLOptimization(_xml_parser.XMLOptimization):
    def __init__(self, filename):
        _xml_parser.XMLOptimization.__init__(self, filename)
    def run(self):
        return _xml_parser.XMLOptimization.run(self)

class Display(_display.Display):
    """A class to display the configuration"""
    def __init__(self):
       _display.Display.__init__(self)

    def create_log(self, repr, log_name):
       """Create Chimera log.
           @param repr <a href="classIMP_1_1restrainer_1_1representation_1_1Representation.html">
            Representation</a> object.
           @param log_name Log name
           @return IMP::dispay::WriteOptimizerState"""
       return _display.Display.create_log(self, repr, log_name)

class Main(_main.Main):
    def __init__(self):
        _main.Main.__init__(self)
    def add_representation(self, fname):
        return _main.Main.add_representation(self, fname)
    def add_restraint(self, fname):
        return _main.Main.add_restraint(self, fname)
    def add_optimization(self, fname):
        return _main.Main.add_optimization(self, fname)
    def add_display(self, fname, logname=None):
        return _main.Main.add_display(self, fname, logname)
    def optimize(self):
        _main.Main.optimize(self)
    def get_model(self):
        return _main.Main.get_model(self)



def create_simple_connectivity_on_rigid_bodies(*args):
  """
    create_simple_connectivity_on_rigid_bodies(IMP::core::RigidBodies const & rbs, Refiner ref=IMP::core::internal::get_rigid_members_refiner()) -> SimpleConnectivity
    create_simple_connectivity_on_rigid_bodies(IMP::core::RigidBodies const & rbs) -> SimpleConnectivity
    """
  return _IMP_restrainer.create_simple_connectivity_on_rigid_bodies(*args)

def create_simple_connectivity_on_molecules(*args):
  """create_simple_connectivity_on_molecules(IMP::atom::Hierarchies const & mhs) -> SimpleConnectivity"""
  return _IMP_restrainer.create_simple_connectivity_on_molecules(*args)

def create_simple_distance(*args):
  """create_simple_distance(IMP::kernel::Particles const & ps) -> SimpleDistance"""
  return _IMP_restrainer.create_simple_distance(*args)

def create_simple_diameter(*args):
  """create_simple_diameter(IMP::kernel::Particles const & ps, IMP::Float diameter) -> SimpleDiameter"""
  return _IMP_restrainer.create_simple_diameter(*args)

def create_simple_excluded_volume_on_rigid_bodies(*args):
  """
    create_simple_excluded_volume_on_rigid_bodies(IMP::core::RigidBodies const & rbs, Refiner ref=IMP::core::internal::get_rigid_members_refiner()) -> SimpleExcludedVolume
    create_simple_excluded_volume_on_rigid_bodies(IMP::core::RigidBodies const & rbs) -> SimpleExcludedVolume
    """
  return _IMP_restrainer.create_simple_excluded_volume_on_rigid_bodies(*args)

def create_simple_excluded_volume_on_molecules(*args):
  """create_simple_excluded_volume_on_molecules(IMP::atom::Hierarchies const & mhs) -> SimpleExcludedVolume"""
  return _IMP_restrainer.create_simple_excluded_volume_on_molecules(*args)

def create_simple_em_fit(*args):
  """
    create_simple_em_fit(IMP::atom::Hierarchies const & mhs, DensityMap dmap) -> SimpleEMFit
    create_simple_em_fit(Hierarchy mh, DensityMap dmap) -> SimpleEMFit
    """
  return _IMP_restrainer.create_simple_em_fit(*args)

def load_em_density_map(*args):
  """load_em_density_map(char const * map_fn, float spacing, float resolution) -> DensityMap"""
  return _IMP_restrainer.load_em_density_map(*args)

def set_rigid_bodies(*args):
  """set_rigid_bodies(IMP::atom::Hierarchies const & mhs) -> IMP::core::RigidBodies"""
  return _IMP_restrainer.set_rigid_bodies(*args)
class SimpleConnectivity(_object):
    """Proxy of C++ IMP::restrainer::SimpleConnectivity class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, SimpleConnectivity, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, SimpleConnectivity, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
    def get_restraint(self):
        """get_restraint(SimpleConnectivity self) -> ConnectivityRestraint"""
        return _IMP_restrainer.SimpleConnectivity_get_restraint(self)

    def get_harmonic_upper_bound(self):
        """get_harmonic_upper_bound(SimpleConnectivity self) -> HarmonicUpperBound"""
        return _IMP_restrainer.SimpleConnectivity_get_harmonic_upper_bound(self)

    def get_sphere_distance_pair_score(self):
        """get_sphere_distance_pair_score(SimpleConnectivity self) -> SphereDistancePairScore"""
        return _IMP_restrainer.SimpleConnectivity_get_sphere_distance_pair_score(self)

    def set_mean(self, *args):
        """set_mean(SimpleConnectivity self, IMP::Float mean)"""
        return _IMP_restrainer.SimpleConnectivity_set_mean(self, *args)

    def set_standard_deviation(self, *args):
        """set_standard_deviation(SimpleConnectivity self, IMP::Float sd)"""
        return _IMP_restrainer.SimpleConnectivity_set_standard_deviation(self, *args)

    def set_k(self, *args):
        """set_k(SimpleConnectivity self, IMP::Float k)"""
        return _IMP_restrainer.SimpleConnectivity_set_k(self, *args)

    def get_version_info(self):
        """get_version_info(SimpleConnectivity self) -> IMP::kernel::VersionInfo"""
        return _IMP_restrainer.SimpleConnectivity_get_version_info(self)

    def show(self, *args):
        """
        show(SimpleConnectivity self, _ostream out=std::cout)
        show(SimpleConnectivity self)
        """
        return _IMP_restrainer.SimpleConnectivity_show(self, *args)

    def __str__(self):
        """__str__(SimpleConnectivity self) -> std::string"""
        return _IMP_restrainer.SimpleConnectivity___str__(self)

    def __repr__(self):
        """__repr__(SimpleConnectivity self) -> std::string"""
        return _IMP_restrainer.SimpleConnectivity___repr__(self)

    __swig_destroy__ = _IMP_restrainer.delete_SimpleConnectivity
    __del__ = lambda self : None;
SimpleConnectivity_swigregister = _IMP_restrainer.SimpleConnectivity_swigregister
SimpleConnectivity_swigregister(SimpleConnectivity)

class SimpleDistance(_object):
    """Proxy of C++ IMP::restrainer::SimpleDistance class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, SimpleDistance, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, SimpleDistance, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
    def get_restraint(self):
        """get_restraint(SimpleDistance self) -> DistanceRestraint"""
        return _IMP_restrainer.SimpleDistance_get_restraint(self)

    def get_harmonic_upper_bound(self):
        """get_harmonic_upper_bound(SimpleDistance self) -> HarmonicUpperBound"""
        return _IMP_restrainer.SimpleDistance_get_harmonic_upper_bound(self)

    def set_mean(self, *args):
        """set_mean(SimpleDistance self, IMP::Float mean)"""
        return _IMP_restrainer.SimpleDistance_set_mean(self, *args)

    def set_standard_deviation(self, *args):
        """set_standard_deviation(SimpleDistance self, IMP::Float sd)"""
        return _IMP_restrainer.SimpleDistance_set_standard_deviation(self, *args)

    def set_k(self, *args):
        """set_k(SimpleDistance self, IMP::Float k)"""
        return _IMP_restrainer.SimpleDistance_set_k(self, *args)

    def get_version_info(self):
        """get_version_info(SimpleDistance self) -> IMP::kernel::VersionInfo"""
        return _IMP_restrainer.SimpleDistance_get_version_info(self)

    def show(self, *args):
        """
        show(SimpleDistance self, _ostream out=std::cout)
        show(SimpleDistance self)
        """
        return _IMP_restrainer.SimpleDistance_show(self, *args)

    def __str__(self):
        """__str__(SimpleDistance self) -> std::string"""
        return _IMP_restrainer.SimpleDistance___str__(self)

    def __repr__(self):
        """__repr__(SimpleDistance self) -> std::string"""
        return _IMP_restrainer.SimpleDistance___repr__(self)

    __swig_destroy__ = _IMP_restrainer.delete_SimpleDistance
    __del__ = lambda self : None;
SimpleDistance_swigregister = _IMP_restrainer.SimpleDistance_swigregister
SimpleDistance_swigregister(SimpleDistance)

class SimpleDiameter(_object):
    """Proxy of C++ IMP::restrainer::SimpleDiameter class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, SimpleDiameter, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, SimpleDiameter, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
    def get_restraint(self):
        """get_restraint(SimpleDiameter self) -> DiameterRestraint"""
        return _IMP_restrainer.SimpleDiameter_get_restraint(self)

    def get_harmonic_upper_bound(self):
        """get_harmonic_upper_bound(SimpleDiameter self) -> HarmonicUpperBound"""
        return _IMP_restrainer.SimpleDiameter_get_harmonic_upper_bound(self)

    def set_mean(self, *args):
        """set_mean(SimpleDiameter self, IMP::Float mean)"""
        return _IMP_restrainer.SimpleDiameter_set_mean(self, *args)

    def set_standard_deviation(self, *args):
        """set_standard_deviation(SimpleDiameter self, IMP::Float sd)"""
        return _IMP_restrainer.SimpleDiameter_set_standard_deviation(self, *args)

    def set_k(self, *args):
        """set_k(SimpleDiameter self, IMP::Float k)"""
        return _IMP_restrainer.SimpleDiameter_set_k(self, *args)

    def get_version_info(self):
        """get_version_info(SimpleDiameter self) -> IMP::kernel::VersionInfo"""
        return _IMP_restrainer.SimpleDiameter_get_version_info(self)

    def show(self, *args):
        """
        show(SimpleDiameter self, _ostream out=std::cout)
        show(SimpleDiameter self)
        """
        return _IMP_restrainer.SimpleDiameter_show(self, *args)

    def __str__(self):
        """__str__(SimpleDiameter self) -> std::string"""
        return _IMP_restrainer.SimpleDiameter___str__(self)

    def __repr__(self):
        """__repr__(SimpleDiameter self) -> std::string"""
        return _IMP_restrainer.SimpleDiameter___repr__(self)

    __swig_destroy__ = _IMP_restrainer.delete_SimpleDiameter
    __del__ = lambda self : None;
SimpleDiameter_swigregister = _IMP_restrainer.SimpleDiameter_swigregister
SimpleDiameter_swigregister(SimpleDiameter)

class SimpleExcludedVolume(_object):
    """Proxy of C++ IMP::restrainer::SimpleExcludedVolume class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, SimpleExcludedVolume, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, SimpleExcludedVolume, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
    def get_restraint(self):
        """get_restraint(SimpleExcludedVolume self) -> ExcludedVolumeRestraint"""
        return _IMP_restrainer.SimpleExcludedVolume_get_restraint(self)

    def get_version_info(self):
        """get_version_info(SimpleExcludedVolume self) -> IMP::kernel::VersionInfo"""
        return _IMP_restrainer.SimpleExcludedVolume_get_version_info(self)

    def show(self, *args):
        """
        show(SimpleExcludedVolume self, _ostream out=std::cout)
        show(SimpleExcludedVolume self)
        """
        return _IMP_restrainer.SimpleExcludedVolume_show(self, *args)

    def __str__(self):
        """__str__(SimpleExcludedVolume self) -> std::string"""
        return _IMP_restrainer.SimpleExcludedVolume___str__(self)

    def __repr__(self):
        """__repr__(SimpleExcludedVolume self) -> std::string"""
        return _IMP_restrainer.SimpleExcludedVolume___repr__(self)

    __swig_destroy__ = _IMP_restrainer.delete_SimpleExcludedVolume
    __del__ = lambda self : None;
SimpleExcludedVolume_swigregister = _IMP_restrainer.SimpleExcludedVolume_swigregister
SimpleExcludedVolume_swigregister(SimpleExcludedVolume)

class SimpleEMFit(_object):
    """Proxy of C++ IMP::restrainer::SimpleEMFit class"""
    __swig_setmethods__ = {}
    __setattr__ = lambda self, name, value: _swig_setattr(self, SimpleEMFit, name, value)
    __swig_getmethods__ = {}
    __getattr__ = lambda self, name: _swig_getattr(self, SimpleEMFit, name)
    def __init__(self, *args, **kwargs): raise AttributeError("No constructor defined")
    def get_restraint(self):
        """get_restraint(SimpleEMFit self) -> FitRestraint"""
        return _IMP_restrainer.SimpleEMFit_get_restraint(self)

    def get_version_info(self):
        """get_version_info(SimpleEMFit self) -> IMP::kernel::VersionInfo"""
        return _IMP_restrainer.SimpleEMFit_get_version_info(self)

    def show(self, *args):
        """
        show(SimpleEMFit self, _ostream out=std::cout)
        show(SimpleEMFit self)
        """
        return _IMP_restrainer.SimpleEMFit_show(self, *args)

    def __str__(self):
        """__str__(SimpleEMFit self) -> std::string"""
        return _IMP_restrainer.SimpleEMFit___str__(self)

    def __repr__(self):
        """__repr__(SimpleEMFit self) -> std::string"""
        return _IMP_restrainer.SimpleEMFit___repr__(self)

    __swig_destroy__ = _IMP_restrainer.delete_SimpleEMFit
    __del__ = lambda self : None;
SimpleEMFit_swigregister = _IMP_restrainer.SimpleEMFit_swigregister
SimpleEMFit_swigregister(SimpleEMFit)


def get_module_version():
  """get_module_version() -> std::string const"""
  return _IMP_restrainer.get_module_version()

def get_example_path(*args):
  """get_example_path(std::string fname) -> std::string"""
  return _IMP_restrainer.get_example_path(*args)

def get_data_path(*args):
  """get_data_path(std::string fname) -> std::string"""
  return _IMP_restrainer.get_data_path(*args)
import _version_check
_version_check.check_version(get_module_version())

# This file is compatible with both classic and new-style classes.