distance.h File Reference
distance metrics More...
#include <IMP/atom/atom_config.h>#include <IMP/core/XYZ.h>#include "Hierarchy.h"#include "Selection.h"#include "IMP/base_types.h"
Include dependency graph for distance.h: This graph shows which files directly or indirectly include this file:Go to the source code of this file.
Classes | |
| class | IMP::atom::RMSDCalculator |
| Used to calculate rmsd between multiple transformation that operate on the same particles. More... | |
Namespaces | |
| namespace | IMP |
| All IMP::kernel code is brought into the IMP namespace. | |
| namespace | IMP::atom |
| See IMP.atom Overview for more information. | |
Typedefs | |
| typedef IMP::base::Vector < RMSDCalculator > | IMP::atom::RMSDCalculators |
Functions | |
| FloatPair | IMP::atom::get_component_placement_score (const core::XYZs &ref1, const core::XYZs &ref2, const core::XYZs &mdl1, const core::XYZs &mdl2) |
| Measure the difference between two placements of the same set of points. More... | |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_drms (const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2) |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_drmsd (const Vector3DsOrXYZs0 &m0, const Vector3DsOrXYZs1 &m1) |
| Calculate the root mean square deviation between two sets of 3D points. More... | |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_native_overlap (const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2, double threshold) |
| Computes the native overlap between two sets of 3D points. More... | |
| double | IMP::atom::get_pairwise_rmsd_score (const core::XYZs &ref1, const core::XYZs &ref2, const core::XYZs &mdl1, const core::XYZs &mdl2) |
| Measure the RMSD between two placements of the same set of points. More... | |
| FloatPair | IMP::atom::get_placement_score (const core::XYZs &source, const core::XYZs &target) |
| Measure the difference between two placements of the same set of points. More... | |
| double | IMP::atom::get_radius_of_gyration (const ParticlesTemp &ps) |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_rigid_bodies_drms (const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2, const IMP::IntRanges &ranges) |
| template<class Vector3DsOrXYZs0 , class Vector3DsOrXYZs1 > | |
| double | IMP::atom::get_rmsd (const Vector3DsOrXYZs0 &m1, const Vector3DsOrXYZs1 &m2, const IMP::algebra::Transformation3D &tr_for_second=IMP::algebra::get_identity_transformation_3d()) |
| Calculate the root mean square deviation between two sets of 3D points. More... | |
| double | IMP::atom::get_rmsd (const Selection &s0, const Selection &s1, const IMP::algebra::Transformation3D &tr_for_second=IMP::algebra::get_identity_transformation_3d()) |
Detailed Description
Copyright 2007-2013 IMP Inventors. All rights reserved.
Definition in file distance.h.