atom_io.h File Reference

Handle read/write of Model data from/to files. More...

#include <IMP/rmf/rmf_config.h>
#include "link_macros.h"
#include <IMP/atom/Hierarchy.h>

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Namespaces
namespace	IMP
	All IMP::kernel code is brought into the IMP namespace.
namespace	IMP::rmf
	See IMP.rmf Overview for more information.

Hierarchy I/O
Hierarchy I/O writes IMP::atom::Hierarchy information along with the information contained in the following decorators IMP::atom::Atom IMP::atom::Residue IMP::core::XYZR IMP::atom::Mass IMP::atom::Diffusion IMP::core::Typed IMP::display::Colored IMP::atom::Domain IMP::atom::Molecule IMP::atom::Copy IMP::core::RigidMember (rigid body information will be written and rigid bodies created even when the IMP::core::RigidBody is not itself written to the file) IMP::core::RigidBody Note IMP::core::XYZ and IMP::core::RigidBody data are stored at each frame. Data for all the other decorators are assumed to be static attributes, and are stored once for the entire RMF file. There is currently no way to customize this. Complain to the IMP team if this is problematic. Note To avoid unexpected behavior, be aware that when linking atom::Hierarchies against an RMF file, the linked hierarchies are assumed to be identical in all of their static attributes to the hierarchies in the RMF file (within RMF::REPRESENTATION nodes). In particular, these hierachies must have the same tree topology (number of children for each node).
void	IMP::rmf::add_hierarchies (RMF::FileHandle fh, const atom::Hierarchies &hs)
void	IMP::rmf::add_hierarchies (RMF::NodeHandle fh, const atom::Hierarchies &hs)
void	IMP::rmf::add_hierarchy (RMF::FileHandle fh, atom::Hierarchy hs)
atom::Hierarchies	IMP::rmf::create_hierarchies (RMF::FileConstHandle fh, Model *m)
void	IMP::rmf::link_hierarchies (RMF::FileConstHandle fh, const atom::Hierarchies &hs)
void	IMP::rmf::set_save_forces (RMF::FileHandle fh, bool tf)

Detailed Description

Copyright 2007-2013 IMP Inventors. All rights reserved.

Definition in file atom_io.h.